BLASTN 2.2.25+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. RID: WEPRR1XH014 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 14,008,131 sequences; 35,879,498,436 total letters Query= Length=250 Score E Sequences producing significant alignments: (Bits) Value gb|DQ226511.1| Morus indica chloroplast, complete genome 352 5e-95 dbj|AB514470.1| Humulus lupulus chloroplast gene for ribosoma... 307 2e-81 gb|HM347959.1| Eucalyptus grandis chloroplast, complete genome 286 6e-75 gb|DQ119058.1| Cucumis sativus chloroplast, complete genome 284 2e-74 gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplas... 284 2e-74 gb|DQ865976.1| Cucumis sativus strain CHIPPER chloroplast, co... 282 7e-74 gb|DQ865975.1| Cucumis sativus cultivar GY14 chloroplast, com... 282 7e-74 emb|AJ970307.1| Cucumis sativus chloroplast complete genome 282 7e-74 gb|JF345175.1| Fragaria vesca subsp. vesca chloroplast, compl... 280 2e-73 gb|GQ870669.3| Syzygium cumini chloroplast, complete genome 280 2e-73 gb|GU363535.1| Fragaria vesca subsp. americana isolate cp1300... 280 2e-73 gb|HQ336404.2| Theobroma cacao chloroplast, complete genome 271 1e-70 gb|HQ336406.1| Castanea mollissima chloroplast, complete genome 271 1e-70 gb|HQ244500.1| Theobroma cacao chloroplast, complete genome 271 1e-70 gb|GU907100.1| Gossypium thurberi chloroplast, complete genome 269 4e-70 gb|HQ207704.1| Corynocarpus laevigata chloroplast, complete g... 268 1e-69 gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chlor... 268 1e-69 emb|FM179380.1| Vitis vinifera complete mitochondrial genome,... 266 5e-69 gb|EU431223.1| Carica papaya chloroplast, complete genome 266 5e-69 gb|HQ336405.1| Prunus persica chloroplast, complete genome 264 2e-68 gb|GQ220323.1| Vitis vinifera strain PN40024 mitochondrion, p... 264 2e-68 emb|AM488743.2| Vitis vinifera contig VV78X232007.2, whole ge... 264 2e-68 dbj|AP009123.1| Gossypium barbadense chloroplast DNA, complet... 264 2e-68 gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, com... 264 2e-68 gb|HQ285842.1| Hevea brasiliensis chloroplast, complete genome 260 2e-67 gb|EU117376.1| Manihot esculenta cultivar TME3 chloroplast, c... 257 3e-66 emb|AM483895.1| Vitis vinifera, whole genome shotgun sequence... 257 3e-66 gb|AY582139.1| Panax ginseng chloroplast, complete genome 255 9e-66 emb|AJ271079.3| Oenothera elata subsp. hookeri chloroplast pl... 248 1e-63 dbj|AB514637.1| Fragaria x ananassa chloroplast gene for ribo... 246 5e-63 dbj|AB514636.1| Fragaria x ananassa chloroplast gene for ribo... 246 5e-63 dbj|AB514635.1| Fragaria x ananassa chloroplast gene for ribo... 246 5e-63 dbj|AB514634.1| Fragaria x ananassa chloroplast gene for ribo... 246 5e-63 dbj|AB514633.1| Fragaria x ananassa chloroplast gene for ribo... 246 5e-63 dbj|AB516320.1| Asparagus officinalis chloroplast gene for ri... 244 2e-62 gb|HQ526161.1| Gossypium herbaceum clone NBRI_E2_396 simple s... 242 6e-62 gb|EU262889.1| Oenothera biennis chloroplast, complete genome 242 6e-62 dbj|AB514142.1| Carya illinoinensis chloroplast gene for ribo... 241 2e-61 gb|EU262890.1| Oenothera glazioviana chloroplast, complete ge... 239 7e-61 gb|HQ526123.1| Gossypium herbaceum clone NBRI_D_3587 simple s... 237 3e-60 dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome 237 3e-60 gb|HQ526417.1| Gossypium herbaceum clone NBRI_C2_548-2 simple... 235 9e-60 gb|HQ524879.1| Gossypium herbaceum clone NBRI_C2_548-1 simple... 235 9e-60 dbj|AB479517.1| Prunus x yedoensis chloroplast rpl16 gene for... 233 3e-59 gb|EU262887.1| Oenothera argillicola chloroplast, complete ge... 232 1e-58 gb|EU118126.1| Ipomoea purpurea chloroplast, complete genome 232 1e-58 gb|AF536225.1| Vigna angularis chloroplast S10B operon, parti... 232 1e-58 gb|EF640709.1| Prunus dulcis clone Pdbcs-E57 putative ribosom... 230 4e-58 dbj|AB514614.1| Vitis labrusca x Vitis vinifera chloroplast g... 228 1e-57 dbj|AB514613.1| Vitis labrusca x Vitis vinifera chloroplast g... 228 1e-57 dbj|AB514612.1| Vitis labrusca chloroplast gene for ribosomal... 228 1e-57 gb|EU262891.1| Oenothera parviflora chloroplast, complete genome 228 1e-57 gb|M60179.1|OBECPRPA O.ammophila ribosomal protein L14 and L1... 228 1e-57 emb|FN997650.2| Olea europaea subsp. europaea complete chloro... 226 5e-57 gb|GU931818.1| Olea europaea cultivar Frantoio chloroplast, c... 226 5e-57 gb|GU228899.1| Olea europaea cultivar Bianchera chloroplast, ... 226 5e-57 gb|EU196765.1| Phaseolus vulgaris chloroplast, complete genome 226 5e-57 gb|AC208048.1| Populus trichocarpa clone JGIACSB05-H15, compl... 226 5e-57 gb|EF489041.1| Populus trichocarpa chloroplast, complete genome 226 5e-57 gb|DQ886273.1| Phaseolus vulgaris cultivar Negro Jamapa chlor... 226 5e-57 dbj|AP008956.1| Populus alba chloroplast DNA, complete genome 226 5e-57 gb|AC239142.1| Carica papaya BAC clone 20J12, complete sequence 224 2e-56 gb|BT098470.1| Soybean clone JCVI-FLGm-12D5 unknown mRNA 224 2e-56 dbj|AB514626.1| Vitis vinifera chloroplast gene for ribosomal... 224 2e-56 dbj|AB514625.1| Vitis vinifera chloroplast gene for ribosomal... 224 2e-56 dbj|AB514624.1| Vitis vinifera chloroplast gene for ribosomal... 224 2e-56 dbj|AB514623.1| Vitis vinifera chloroplast gene for ribosomal... 224 2e-56 dbj|AB514622.1| Vitis vinifera chloroplast gene for ribosomal... 224 2e-56 dbj|AB514621.1| Vitis vinifera chloroplast gene for ribosomal... 224 2e-56 dbj|AB514620.1| Vitis vinifera chloroplast gene for ribosomal... 224 2e-56 dbj|AB514619.1| Vitis vinifera chloroplast gene for ribosomal... 224 2e-56 dbj|AB514618.1| Vitis vinifera chloroplast gene for ribosomal... 224 2e-56 dbj|AB514617.1| Vitis vinifera chloroplast gene for ribosomal... 224 2e-56 dbj|AB514616.1| Vitis labrusca x Vitis vinifera chloroplast g... 224 2e-56 dbj|AB514615.1| Vitis labrusca x Vitis vinifera chloroplast g... 224 2e-56 gb|GQ893027.1| Vigna radiata cultivar kampangsan1 chloroplast... 223 6e-56 dbj|AB514627.1| Vitis vinifera chloroplast gene for ribosomal... 223 6e-56 gb|EU849490.1| Gonystylus bancanus chloroplast, partial genome 223 6e-56 emb|X68048.1| Phaseolus vulgaris chloroplast DNA for tRNA-His... 223 6e-56 gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, co... 219 7e-55 gb|HQ179769.1| Limnanthes floccosa subsp. floccosa chloroplas... 217 2e-54 gb|HQ179768.1| Limnanthes floccosa subsp. grandiflora chlorop... 217 2e-54 dbj|AB201293.1| Prunus apetala chloroplast rpl16 gene for rib... 217 2e-54 gb|M80799.1|VIRCPRPL Vigna unguiculata chloroplast ribosomal ... 217 2e-54 emb|CU633466.10| M.truncatula DNA sequence from clone MTH2-41... 215 8e-54 gb|AC124957.18| Medicago truncatula clone mth2-15k14, complet... 215 8e-54 gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete ... 215 8e-54 dbj|AB201295.1| Prunus maximowiczii chloroplast rpl16 gene fo... 215 8e-54 dbj|AB201292.1| Prunus apetala chloroplast rpl16 gene for rib... 215 8e-54 gb|AC093544.8| Medicago truncatula chloroplast, complete geno... 215 8e-54 dbj|AB201297.1| Prunus campanulata chloroplast rpl16 gene for... 214 3e-53 gb|AC243153.1| Gossypium hirsutum clone MX100J07-jou, complet... 212 1e-52 gb|FJ695500.1| Jatropha curcas chloroplast, complete genome 212 1e-52 gb|BT051540.1| Medicago truncatula clone MTYF1_F2_F3_F41G-J-2... 212 1e-52 dbj|AP009368.1| Olimarabidopsis pumila chloroplast DNA, compl... 212 1e-52 gb|GU456628.1| Anthriscus cerefolium chloroplast, complete ge... 208 1e-51 dbj|AP009374.1| Lepidium virginicum chloroplast DNA, complete... 208 1e-51 emb|AJ400848.1| Spinacia oleracea complete chloroplast genome 208 1e-51 dbj|AP009370.1| Barbarea verna chloroplast DNA, complete sequ... 206 4e-51 gb|EF534108.1| Beta vulgaris chloroplast sequence 205 1e-50 ALIGNMENTS >gb|DQ226511.1| Morus indica chloroplast, complete genome Length=158484 Score = 352 bits (390), Expect = 5e-95 Identities = 236/262 (90%), Gaps = 12/262 (5%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| |||| Sbjct 84389 AAATGAGCGGAGTACCAGAAAATATAGCCAGAAAAGCTATTGCAATAGCGGCATCCAAAA 84330 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 84329 TGCCTATACGAACTCAATTCATTATTTCAGGATAGGAATGTAGAACCAAAAGAAAGAGGT 84270 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTC-TTTTTTGTTTTGAATAAACAA-----C 174 |||| ||||||||||||| |||| |||||||| |||||||||||| |||||||| | Sbjct 84269 TTTTCGGATGAAAAAAAACAATTGCAGGTTTCTTTTTTTGTTTTGGATAAACAATATTTC 84210 Query 175 AtttttttttttACTTCGC------CTTTTGCATTGAAAAAACAGATAAAAAATGATATG 228 ||||||||||||||| || | |||||||||||||||||||||||||| |||||| Sbjct 84209 TTTTTTTTTTTTACTTAGCCCTTTGCCTTTGCATTGAAAAAACAGATAAAAAACGATATG 84150 Query 229 ATTCAACCTCAAACCCATTTGA 250 |||||||||||||||||||||| Sbjct 84149 ATTCAACCTCAAACCCATTTGA 84128 >dbj|AB514470.1| Humulus lupulus chloroplast gene for ribosomal protein L16, partial cds Length=494 Score = 307 bits (340), Expect = 2e-81 Identities = 209/232 (90%), Gaps = 12/232 (5%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||| || ||||| ||||||||||||||||||||||||||||||||||| || |||| Sbjct 264 AAATGAGTGGGGTAGCCGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCTTCCAAAA 323 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 324 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAGATGTAGAACCAAAAGAAA-AAGG 382 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTC-TTTTTTGTTTTGAATAAACAACA---- 175 |||||||||||||||||| |||| |||||||| |||||||||||||| |||||||| Sbjct 383 TTTTTGGATGAAAAAAAACAATTGCAGGTTTCTTTTTTTGTTTTGAACAAACAACATTTC 442 Query 176 -tttttttttttACTTCGCC-----TTTTGCATTGAAAAAACAGATAAAAAA 221 ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 443 TTTTTTTTTTTTACTTCGCCCTTTGCTTTGCATTGAAAAAACAGATAAAAAA 494 >gb|HM347959.1| Eucalyptus grandis chloroplast, complete genome Length=160137 Score = 286 bits (316), Expect = 6e-75 Identities = 220/259 (85%), Gaps = 19/259 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 85946 AAATGGGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCGTCCAAAA 85887 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||| |||||||| |||||| || ||||||||||| |||||||| Sbjct 85886 TGCCTATACGAACTCAATTTATTATTTCGGGATAGGAACGTAGAACCAAAGAAAAGAAGT 85827 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAtt--t 178 || |||| ||||||||||| ||||||||||||| | |||||| ||| | Sbjct 85826 CTTGGGGAT---AAAAAAAAATTGCAGGTTTCTTTTT-------GACAAACAATATTTCT 85777 Query 179 ttttttttACTTCGCCTTTTG------CATTGAAAAAACAGA-TAAAAAATGATATGATT 231 |||||||||||||||| |||| |||||||| |||||| | ||||||||||||||| Sbjct 85776 TTTTTTTTACTTCGCCCTTTGGATTAACATTGAAAGAACAGATTCAAAAATGATATGATT 85717 Query 232 CAACCTCAAACCCATTTGA 250 |||||||||| |||||||| Sbjct 85716 CAACCTCAAAGCCATTTGA 85698 >gb|DQ119058.1| Cucumis sativus chloroplast, complete genome Length=155527 Score = 284 bits (314), Expect = 2e-74 Identities = 225/263 (86%), Gaps = 13/263 (5%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||| Sbjct 83795 AAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAA 83736 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAA--GAA 118 ||||||||||||| |||||||||| ||| |||||||||||||||| |||| |||| || Sbjct 83735 TGCCTATACGAACCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGAAAGCGAT 83676 Query 119 GTTT-TTTG-GATGaaaaaaaaa-aaTTTCAGGTTTC---TTTTTTGTTTTGAATAAACA 172 ||| |||| ||||||||||||| |||| || |||| |||||| ||||| | ||||| Sbjct 83675 CTTTGTTTGAGATGAAAAAAAAACAATTGTAGATTTCTTTTTTTTTTTTTTGGAAAAACA 83616 Query 173 ACA----tttttttttttACTTCGCCTTTTGCATTGAAAAAACAGA-TAAAAAATGATAT 227 | | ||||||||||||||||||| |||||||||||| || ||| | ||||| |||| Sbjct 83615 ATATTTCTTTTTTTTTTTACTTCGCCCTTTGCATTGAAAGAAAAGATTCCAAAATAATAT 83556 Query 228 GATTCAACCTCAAACCCATTTGA 250 ||||||||||||||||| ||||| Sbjct 83555 GATTCAACCTCAAACCCTTTTGA 83533 >gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length=160286 Score = 284 bits (314), Expect = 2e-74 Identities = 220/260 (85%), Gaps = 20/260 (8%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 86080 AAATGGGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCGTCCAAAA 86021 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||| |||||||| |||||| || ||||||||||| |||||||| Sbjct 86020 TGCCTATACGAACTCAATTTATTATTTCGGGATAGGAACGTAGAACCAAAGAAAAGAAGT 85961 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAt---t 177 || |||| ||||||||||| ||||||||||||| | |||||| || | Sbjct 85960 CTTGGGGAT---AAAAAAAAATTGCAGGTTTCTTTTT-------GACAAACAATATTTCT 85911 Query 178 tttttttttACTTCGCCTTTTG------CATTGAAAAAACAGA-TAAAAAATGATATGAT 230 ||||||||||||||||| |||| |||||||| |||||| | |||||||||||||| Sbjct 85910 TTTTTTTTTACTTCGCCCTTTGGATTAACATTGAAAGAACAGATTCAAAAATGATATGAT 85851 Query 231 TCAACCTCAAACCCATTTGA 250 ||||||||||| |||||||| Sbjct 85850 TCAACCTCAAAGCCATTTGA 85831 >gb|DQ865976.1| Cucumis sativus strain CHIPPER chloroplast, complete genome Length=155524 Score = 282 bits (312), Expect = 7e-74 Identities = 226/264 (86%), Gaps = 15/264 (6%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||| Sbjct 83792 AAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAA 83733 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAA--GAA 118 ||||||||||||| |||||||||| ||| |||||||||||||||| |||| |||| || Sbjct 83732 TGCCTATACGAACCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGAAAGCGAT 83673 Query 119 GTTT-TTTG-GATGaaaaaaaaa-aaTTTCAGGTTTC----TTTTTTGTTTTGAATAAAC 171 ||| |||| ||||||||||||| |||| || |||| |||||| ||||||| |||| Sbjct 83672 CTTTGTTTGAGATGAAAAAAAAACAATTGTAGATTTCTTTTTTTTTTTTTTTGAA-AAAC 83614 Query 172 AACA----tttttttttttACTTCGCCTTTTGCATTGAAAAAACAGA-TAAAAAATGATA 226 || | ||||||||||||||||||| |||||||||||| || ||| | ||||| ||| Sbjct 83613 AATATTTCTTTTTTTTTTTACTTCGCCCTTTGCATTGAAAGAAAAGATTCCAAAATAATA 83554 Query 227 TGATTCAACCTCAAACCCATTTGA 250 |||||||||||||||||| ||||| Sbjct 83553 TGATTCAACCTCAAACCCTTTTGA 83530 >gb|DQ865975.1| Cucumis sativus cultivar GY14 chloroplast, complete genome Length=155525 Score = 282 bits (312), Expect = 7e-74 Identities = 226/264 (86%), Gaps = 15/264 (6%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||| Sbjct 83793 AAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAA 83734 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAA--GAA 118 ||||||||||||| |||||||||| ||| |||||||||||||||| |||| |||| || Sbjct 83733 TGCCTATACGAACCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGAAAGCGAT 83674 Query 119 GTTT-TTTG-GATGaaaaaaaaa-aaTTTCAGGTTTC----TTTTTTGTTTTGAATAAAC 171 ||| |||| ||||||||||||| |||| || |||| |||||| ||||||| |||| Sbjct 83673 CTTTGTTTGAGATGAAAAAAAAACAATTGTAGATTTCTTTTTTTTTTTTTTTGAA-AAAC 83615 Query 172 AACA----tttttttttttACTTCGCCTTTTGCATTGAAAAAACAGA-TAAAAAATGATA 226 || | ||||||||||||||||||| |||||||||||| || ||| | ||||| ||| Sbjct 83614 AATATTTCTTTTTTTTTTTACTTCGCCCTTTGCATTGAAAGAAAAGATTCCAAAATAATA 83555 Query 227 TGATTCAACCTCAAACCCATTTGA 250 |||||||||||||||||| ||||| Sbjct 83554 TGATTCAACCTCAAACCCTTTTGA 83531 >emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length=155293 Score = 282 bits (312), Expect = 7e-74 Identities = 226/264 (86%), Gaps = 15/264 (6%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||| Sbjct 83567 AAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAA 83508 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAA--GAA 118 ||||||||||||| |||||||||| ||| |||||||||||||||| |||| |||| || Sbjct 83507 TGCCTATACGAACCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGAAAGCGAT 83448 Query 119 GTTT-TTTG-GATGaaaaaaaaa-aaTTTCAGGTTTC----TTTTTTGTTTTGAATAAAC 171 ||| |||| ||||||||||||| |||| || |||| |||||| ||||||| |||| Sbjct 83447 CTTTGTTTGAGATGAAAAAAAAACAATTGTAGATTTCTCTTTTTTTTTTTTTGAA-AAAC 83389 Query 172 AACA----tttttttttttACTTCGCCTTTTGCATTGAAAAAACAGA-TAAAAAATGATA 226 || | ||||||||||||||||||| |||||||||||| || ||| | ||||| ||| Sbjct 83388 AATATTTCTTTTTTTTTTTACTTCGCCCTTTGCATTGAAAGAAAAGATTCCAAAATAATA 83329 Query 227 TGATTCAACCTCAAACCCATTTGA 250 |||||||||||||||||| ||||| Sbjct 83328 TGATTCAACCTCAAACCCTTTTGA 83305 >gb|JF345175.1| Fragaria vesca subsp. vesca chloroplast, complete genome Length=155691 Score = 280 bits (310), Expect = 2e-73 Identities = 223/263 (85%), Gaps = 19/263 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 82604 AAATGAGCGGAGTGGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 82545 Query 61 TGCCTATACGAACTCAATTCATTATTTC-----AGGATAGAAATGTAGAACCAAAAGAAA 115 ||||||||||||||||||||||| |||| ||||||| |||||| ||| ||| |||| Sbjct 82544 TGCCTATACGAACTCAATTCATTCTTTCGGTATAGGATAGGAATGTATAACAAAAGGAAA 82485 Query 116 GAAGTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTT-TTTTGTTTTGAATAAACAAC 174 ||| |||||| ||| ||||||| |||| ||||||||| |||||||||||| |||||| Sbjct 82484 GAA-TTTTTTTGAT--AAAAAAACAATTGTAGGTTTCTTGTTTTGTTTTGAACAAACAAT 82428 Query 175 AtttttttttttACTTCGCCTTTTGCATTG-AAAAAACAGA------TAAAAAATGATAT 227 |||| |||||| ||| || ||| ||||| |||| ||| | |||||| ||||| Sbjct 82427 ATTTCTTTTTT---TTCACCCTTTACATTGCAAAAGACAAAACCAATAAAAAAAAGATAT 82371 Query 228 GATTCAACCTCAAACCCATTTGA 250 |||||| |||||||||||||||| Sbjct 82370 GATTCAGCCTCAAACCCATTTGA 82348 >gb|GQ870669.3| Syzygium cumini chloroplast, complete genome Length=160373 Score = 280 bits (310), Expect = 2e-73 Identities = 219/260 (84%), Gaps = 20/260 (8%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 86163 AAATGGGGGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCGTCCAAAA 86104 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||| || ||||| |||||| || ||||||||||| |||||||| Sbjct 86103 TGCCTATACGAACTCAATTTATGATTTCGGGATAGGAACGTAGAACCAAAGAAAAGAAGT 86044 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAt---t 177 || |||| ||||||||||| ||||||||||||| | |||||| || | Sbjct 86043 CTTGGGGAT---AAAAAAAAATTGCAGGTTTCTTTTT-------GACAAACAATATTTCT 85994 Query 178 tttttttttACTTCGCCTTTTG------CATTGAAAAAACAGA-TAAAAAATGATATGAT 230 ||||||||||||||||| |||| |||||||| |||||| |||||||||||||||| Sbjct 85993 TTTTTTTTTACTTCGCCCTTTGCATTAACATTGAAAGAACAGATTAAAAAATGATATGAT 85934 Query 231 TCAACCTCAAACCCATTTGA 250 ||||||||||| |||||||| Sbjct 85933 TCAACCTCAAAGCCATTTGA 85914 >gb|GU363535.1| Fragaria vesca subsp. americana isolate cp130096 chloroplast sequence Length=130096 Score = 280 bits (310), Expect = 2e-73 Identities = 223/263 (85%), Gaps = 19/263 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 82687 AAATGAGCGGAGTGGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 82628 Query 61 TGCCTATACGAACTCAATTCATTATTTC-----AGGATAGAAATGTAGAACCAAAAGAAA 115 ||||||||||||||||||||||| |||| ||||||| |||||| ||| ||| |||| Sbjct 82627 TGCCTATACGAACTCAATTCATTCTTTCGGTATAGGATAGGAATGTATAACAAAAGGAAA 82568 Query 116 GAAGTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTT-TTTTGTTTTGAATAAACAAC 174 ||| |||||| ||| ||||||| |||| ||||||||| |||||||||||| |||||| Sbjct 82567 GAA-TTTTTTTGAT--AAAAAAACAATTGTAGGTTTCTTGTTTTGTTTTGAACAAACAAT 82511 Query 175 AtttttttttttACTTCGCCTTTTGCATTG-AAAAAACAGA------TAAAAAATGATAT 227 |||| |||||| ||| || ||| ||||| |||| ||| | |||||| ||||| Sbjct 82510 ATTTCTTTTTT---TTCACCCTTTACATTGCAAAAGACAAAACCAATAAAAAAAAGATAT 82454 Query 228 GATTCAACCTCAAACCCATTTGA 250 |||||| |||||||||||||||| Sbjct 82453 GATTCAGCCTCAAACCCATTTGA 82431 >gb|HQ336404.2| Theobroma cacao chloroplast, complete genome Length=160604 Score = 271 bits (300), Expect = 1e-70 Identities = 216/253 (85%), Gaps = 9/253 (4%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||| Sbjct 86365 AAATGAGCGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCGTCCAAAA 86306 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||| |||||||||||||||||| |||||| ||| |||||||||| |||||||| Sbjct 86305 TGCCTATAAAAACTCAATTCATTATTTCCGGATAGGAATATAGAACCAAAGGAAAGAAG- 86247 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAttttt 180 | || ||| |||||||| | || | |||||| ||||| ||||| | |||||| |||| | Sbjct 86246 TCTTGGGAATAAAAAAAACACTTGCGGGTTTCCTTTTT-TTTTG-ACAAACAATATTTCT 86189 Query 181 ttttttACTTCG-CCTT--TTGCATTGAAAAAACAGATAAAAAATGATATGATTCAACCT 237 |||||| ||||| |||| ||||||||||| || |||| |||| | |||||||||||| Sbjct 86188 TTTTTTTCTTCGTCCTTTGTTGCATTGAAAGAAGAGATTAAAA---AAATGATTCAACCT 86132 Query 238 CAAACCCATTTGA 250 || |||||||||| Sbjct 86131 CAGACCCATTTGA 86119 >gb|HQ336406.1| Castanea mollissima chloroplast, complete genome Length=160799 Score = 271 bits (300), Expect = 1e-70 Identities = 220/266 (83%), Gaps = 18/266 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 87358 AAATGGGTGGAGTAGCAGAAAATGTAGCCAGAAAGGCTATTTCAATAGCGGCATCCAAAA 87299 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||| |||||||||||||| ||||| |||||| ||||||| |||||| | Sbjct 87298 TGCCTATACGAACGCAATTCATTATTTCGGGATAAGAATGTATAACCAAAGAAAAGAAAT 87239 Query 121 TTTTTGGATGaaaaaaa-----aaaaTTTCAGGTTTC----TTTTTTGTTTTGAATAAAC 171 ||||| |||||||||| |||||| ||||||| |||||||||||| | |||| Sbjct 87238 CTTTTGAATGAAAAAAAAAAACAAAATTATAGGTTTCTTTTTTTTTTGTTTTGGACAAAC 87179 Query 172 AACAtttttttttttACTTCG-CCTTTTGCATTGAAA--------AAACAGATAAAAAAT 222 || |||| ||||||||||| | || || ||| ||||| ||| | | ||||||| Sbjct 87178 AATATTTCTTTTTTTACTTAGCCCCTTCGCAGTGAAAGAGCAAATAAAAAAAAAAAAAAT 87119 Query 223 GATATGATTCAACCTCAAACCCATTT 248 ||||||||||||||||||||||| || Sbjct 87118 GATATGATTCAACCTCAAACCCACTT 87093 >gb|HQ244500.1| Theobroma cacao chloroplast, complete genome Length=160546 Score = 271 bits (300), Expect = 1e-70 Identities = 216/253 (85%), Gaps = 9/253 (4%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||| Sbjct 86223 AAATGAGCGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCGTCCAAAA 86164 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||| |||||||||||||||||| |||||| ||| |||||||||| |||||||| Sbjct 86163 TGCCTATAAAAACTCAATTCATTATTTCCGGATAGGAATATAGAACCAAAGGAAAGAAG- 86105 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAttttt 180 | || ||| |||||||| | || | |||||| ||||| ||||| | |||||| |||| | Sbjct 86104 TCTTGGGAATAAAAAAAACACTTGCGGGTTTCCTTTTT-TTTTG-ACAAACAATATTTCT 86047 Query 181 ttttttACTTCG-CCTT--TTGCATTGAAAAAACAGATAAAAAATGATATGATTCAACCT 237 |||||| ||||| |||| ||||||||||| || |||| |||| | |||||||||||| Sbjct 86046 TTTTTTTCTTCGTCCTTTGTTGCATTGAAAGAAGAGATTAAAA---AAATGATTCAACCT 85990 Query 238 CAAACCCATTTGA 250 || |||||||||| Sbjct 85989 CAGACCCATTTGA 85977 >gb|GU907100.1| Gossypium thurberi chloroplast, complete genome Length=160264 Score = 269 bits (298), Expect = 4e-70 Identities = 217/256 (85%), Gaps = 11/256 (4%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 85626 AAATGAGCGGAGTAGCCGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCGTCAAAAA 85567 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||| Sbjct 85566 TGCCTATAAAAACTCAATTCATTATTTCAGGATAGGAATATAGAACCAAAGGAAAGAAGT 85507 Query 121 TTT---TTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAtt 177 || |||| ||||||| |||| | ||||| ||||| ||||| | |||||| ||| Sbjct 85506 CTTGTCTTGGGAATAAAAAAACAATTGCGAGTTTCCTTTTTTTTTTG-ACAAACAATATT 85448 Query 178 tttttttttACTTCG-CCTT--TTGCATTGAAAAAACAGATAAAAAATGATATGATTCAA 234 | ||||||| ||||| |||| || ||||||||||| |||| || | ||||||||| Sbjct 85447 TCTTTTTTT-CTTCGTCCTTTGTTACATTGAAAAAAGAGATTTCAA---AAATGATTCAA 85392 Query 235 CCTCAAACCCATTTGA 250 ||||| |||||||||| Sbjct 85391 CCTCAGACCCATTTGA 85376 >gb|HQ207704.1| Corynocarpus laevigata chloroplast, complete genome Length=159202 Score = 268 bits (296), Expect = 1e-69 Identities = 225/280 (80%), Gaps = 31/280 (11%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||||||||||||||||||||||| |||||||| |||||||| ||||||| Sbjct 85798 AAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATTTCCATAGCGGCGTCAAAAA 85739 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| || Sbjct 85738 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAATGTAGAACCAAAGGAAAGAGGT 85679 Query 121 TTTTTGGATGaaaaaaaa--------------aaaTTTCAGGTTTCTTTTTTGTTTTGAA 166 || ||||||||||||| || ||| || |||||||||| ||||| | Sbjct 85678 CCTTGGGATGAAAAAAAAAACAATTGCAATTTAAGTTTAAGATTTCTTTTTTTTTTTG-A 85620 Query 167 TAAACAACA------tttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT----- 215 |||||| | |||||||||| |||||||| |||||||||||| ||||||| Sbjct 85619 CAAACAATATTTCTTTTTTTTTTTTGACTTCGCCCTTTGCATTGAAAGAACAGATAAAAA 85560 Query 216 -----AAAAAATGATATGATTCAACCTCAAACCCATTTGA 250 |||||| |||||||||||||||||| |||||||| Sbjct 85559 AAAAAAAAAAAGAATATGATTCAACCTCAAAGCCATTTGA 85520 >gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length=160301 Score = 268 bits (296), Expect = 1e-69 Identities = 216/256 (84%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 85682 AAATGAGCGGAGTAGCCGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCGTCAAAAA 85623 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||| Sbjct 85622 TGCCTATAAAAACTCAATTCATTATTTCAGGATAGGAATATAGAACCAAAGGAAAGAAGT 85563 Query 121 TTT---TTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAtt 177 || |||| ||||||| |||| | ||||| ||||| |||| | |||||| ||| Sbjct 85562 CTTGTCTTGGGAATAAAAAAACAATTGCGAGTTTCCTTTTTTTTTTTGACAAACAATATT 85503 Query 178 tttttttttACTTCG-CCTT--TTGCATTGAAAAAACAGATAAAAAATGATATGATTCAA 234 | ||||||| ||||| |||| || ||||||||||| |||| || | ||||||||| Sbjct 85502 TCTTTTTTT-CTTCGTCCTTTGTTACATTGAAAAAAGAGATTTCAA---AAATGATTCAA 85447 Query 235 CCTCAAACCCATTTGA 250 ||||| |||||||||| Sbjct 85446 CCTCAGACCCATTTGA 85431 >emb|FM179380.1| Vitis vinifera complete mitochondrial genome, cultivar Pinot noir clone ENTAV115 Length=773279 Features in this part of subject sequence: NADH dehydrogenase subunit 5 ribosomal protein L16 Score = 266 bits (294), Expect = 5e-69 Identities = 215/255 (84%), Gaps = 14/255 (5%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||||| || |||| Sbjct 671428 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGGCGTCCAAAA 671487 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 671488 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 671541 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAtt- 177 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| ||| Sbjct 671542 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 671598 Query 178 -tttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATATGATTCAAC 235 ||||||||| ||||| |||||||||||||| | || |||||||||||||||||||| Sbjct 671599 CTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATATGATTCAAC 671658 Query 236 CTCAAACCCATTTGA 250 | || |||||||||| Sbjct 671659 CCCAGACCCATTTGA 671673 >gb|EU431223.1| Carica papaya chloroplast, complete genome Length=160100 Score = 266 bits (294), Expect = 5e-69 Identities = 217/260 (83%), Gaps = 19/260 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 |||||||||||||||| ||||||||||| |||| |||||||||||||||||| || |||| Sbjct 85982 AAATGAGCGGAGTAGCCGAAAATATAGCTAGAAGGGCTATTTCAATAGCGGCGTCCAAAA 85923 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAA--CCAAAAGAAAGAA 118 |||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||| Sbjct 85922 TGCCTATAAAAACTCAATTCATTATTTCGGGATAGAAATGTGGAATCACAAAAGAAAGAA 85863 Query 119 GTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAA----- 173 || || || | ||||||||| ||| |||||||| ||||| | |||||| Sbjct 85862 GTCTT-----AGAGATAAAAAAATTGCAGTTTTCTTTT---TTTTG-ACAAACAATATTT 85812 Query 174 CAtttttttttttACTTCGCCTTTTGCATTGAAAAAACAGA---TAAAAAATGATATGAT 230 | ||||||||||||||||| | |||||||| ||| |||||| | |||||||||||||| Sbjct 85811 CTTTTTTTTTTTTACTTCGTCCTTTGCATTTAAAGAACAGATTTTTAAAAATGATATGAT 85752 Query 231 TCAACCTCAAACCCATTTGA 250 ||||||||| |||||||||| Sbjct 85751 TCAACCTCAGACCCATTTGA 85732 >gb|HQ336405.1| Prunus persica chloroplast, complete genome Length=157790 Score = 264 bits (292), Expect = 2e-68 Identities = 214/257 (83%), Gaps = 18/257 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| Sbjct 83033 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAGGGCAATTTCAATAGCGGCATCCAAAA 82974 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||| |||| |||||| |||||||| |||| ||||| || Sbjct 82973 TGCCTATACGAACTCAATTCATTCTTTCGGGATAGGGATGTAGAAACAAAGGAAAGGGGT 82914 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAttttt 180 ||||| ||| ||||||||||| |||| |||||||||||||| ||| || |||| | Sbjct 82913 CTTTTGTATG--AAAAAAAAATTGCAGG----TTTTTTGTTTTGAACAAATAATATTTCT 82860 Query 181 ttttttACTTCGCCTTTTGCATTGA----AAAAACAGAT-----AAAAAATGATATGATT 231 ||||| || | | ||||||||| ||||| | || |||||| ||||||||| Sbjct 82859 TTTTT---TTAGACCCTTGCATTGAAAACAAAAAAAAATCGATAAAAAAACGATATGATT 82803 Query 232 CAACCTCAAACCCATTT 248 ||||||||||||||||| Sbjct 82802 CAACCTCAAACCCATTT 82786 >gb|GQ220323.1| Vitis vinifera strain PN40024 mitochondrion, partial genome Length=339264 Features in this part of subject sequence: ribosomal protein L16 ribosomal protein L14 Score = 264 bits (292), Expect = 2e-68 Identities = 215/256 (84%), Gaps = 15/256 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||||| || |||| Sbjct 199326 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGGCGTCCAAAA 199385 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 199386 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 199439 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 199440 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 199496 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATATGATTCAA 234 |||||||||| ||||| |||||||||||||| | || ||||||||||||||||||| Sbjct 199497 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATATGATTCAA 199556 Query 235 CCTCAAACCCATTTGA 250 || || |||||||||| Sbjct 199557 CCCCAGACCCATTTGA 199572 >emb|AM488743.2| Vitis vinifera contig VV78X232007.2, whole genome shotgun sequence Length=4785 Score = 264 bits (292), Expect = 2e-68 Identities = 215/256 (84%), Gaps = 15/256 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||||| || |||| Sbjct 3569 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGGCGTCCAAAA 3628 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 3629 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 3682 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 3683 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 3739 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATATGATTCAA 234 |||||||||| ||||| |||||||||||||| | || ||||||||||||||||||| Sbjct 3740 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATATGATTCAA 3799 Query 235 CCTCAAACCCATTTGA 250 || || |||||||||| Sbjct 3800 CCCCAGACCCATTTGA 3815 >dbj|AP009123.1| Gossypium barbadense chloroplast DNA, complete genome Length=160317 Score = 264 bits (292), Expect = 2e-68 Identities = 215/256 (84%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 |||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 85728 AAATGAGCGGAGTAGCCGAAAATATAGCCAGAAAGGCTATTTCAATAGTGGCGTCAAAAA 85669 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||| Sbjct 85668 TGCCTATAAAAACTCAATTCATTATTTCAGGATAGGAATATAGAACCAAAGGAAAGAAGT 85609 Query 121 TTT---TTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAtt 177 || |||| ||||||| |||| | ||||| ||||| |||| | |||||| ||| Sbjct 85608 CTTGTCTTGGGAATAAAAAAACAATTGCGAGTTTCCTTTTTTTTTTTGACAAACAATATT 85549 Query 178 tttttttttACTTCG-CCTT--TTGCATTGAAAAAACAGATAAAAAATGATATGATTCAA 234 | ||||||| ||||| |||| || ||||||||||| |||| || | ||||||||| Sbjct 85548 TCTTTTTTT-CTTCGTCCTTTGTTACATTGAAAAAAGAGATTTCAA---AAATGATTCAA 85493 Query 235 CCTCAAACCCATTTGA 250 ||||| |||||||||| Sbjct 85492 CCTCAGACCCATTTGA 85477 >gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length=160928 Score = 264 bits (292), Expect = 2e-68 Identities = 215/256 (84%), Gaps = 15/256 (6%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||||| || |||| Sbjct 86132 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGGCGTCCAAAA 86073 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 86072 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 86019 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 86018 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 85962 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATATGATTCAA 234 |||||||||| ||||| |||||||||||||| | || ||||||||||||||||||| Sbjct 85961 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATATGATTCAA 85902 Query 235 CCTCAAACCCATTTGA 250 || || |||||||||| Sbjct 85901 CCCCAGACCCATTTGA 85886 >gb|HQ285842.1| Hevea brasiliensis chloroplast, complete genome Length=161191 Score = 260 bits (288), Expect = 2e-67 Identities = 212/255 (83%), Gaps = 13/255 (5%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| |||||||||||||| |||||||||| Sbjct 86120 AAATGGGCGGAGTAGCAGAAAATATAGCGAGAAAAGCTATTTCAATAGCAGCATCAAAAA 86061 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| |||||||||| |||| | Sbjct 86060 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAATATAGAACCAAAGGAAAAAGAC 86001 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTC-TTTTTTGTTTTGAATAAACAACAtttt 179 ||||||||| |||||||||| || ||| | |||||| ||||| | |||||| || | Sbjct 86000 CTTTTGGATG-CAAAAAAAAATCACAAGTTCCTTTTTTTTTTTTGGACAAACAATATATC 85942 Query 180 tttttttACTTCGCCTTTTGCATTGAAAAAACAGAT----AAAAAATGATATGATTCAAC 235 ||||||| | |||||||| ||| ||||||| ||||||||||||||| ||| Sbjct 85941 TTTTTTT-------CCTTTGCATTAAAATAACAGATTAAAAAAAAATGATATGATCCAAT 85889 Query 236 CTCAAACCCATTTGA 250 |||| |||||||||| Sbjct 85888 CTCAGACCCATTTGA 85874 >gb|EU117376.1| Manihot esculenta cultivar TME3 chloroplast, complete genome Length=161453 Score = 257 bits (284), Expect = 3e-66 Identities = 211/255 (83%), Gaps = 14/255 (5%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||| ||||||||||| ||||| |||||||||||||| |||||||||| Sbjct 86376 AAATGGGCGGAGTAGCCGAAAATATAGCGAGAAAAGCTATTTCAATAGCAGCATCAAAAA 86317 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | Sbjct 86316 TGCCTATACGAACTCAATTCATTATTTCAGGATAGGAATATAGAACCAAAAGAAAAAGAC 86257 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAttttt 180 ||||||||| ||||||||| || ||||||||||| ||||| | ||| || || | Sbjct 86256 CTTTTGGATG--CAAAAAAAATCGCAAGTTTCTTTTTT-TTTTGGACAAATAATATATCC 86200 Query 181 ttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-----AAAAAATGATATGATTCAAC 235 |||||| | |||||||| ||| ||||||| ||||||||||||||| ||| Sbjct 86199 TTTTTT------TCCTTTGCATTAAAATAACAGATTAAAAAAAAAATGATATGATCCAAT 86146 Query 236 CTCAAACCCATTTGA 250 |||| |||||||||| Sbjct 86145 CTCAGACCCATTTGA 86131 >emb|AM483895.1| Vitis vinifera, whole genome shotgun sequence, contig VV78X176948.9, clone ENTAV 115 Length=13887 Score = 257 bits (284), Expect = 3e-66 Identities = 213/256 (83%), Gaps = 15/256 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| ||||||||||| |||||||||| ||||| |||||||||||||||| || |||| Sbjct 7132 AAATGGGCGGAGTAGCARAAAATATAGCTAGAAAATCTATTTCAATAGCGGCGTCCAAAA 7191 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 7192 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 7245 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 7246 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 7302 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATATGATTCAA 234 |||||||||| ||||| |||||||||||||| | || ||||||||||||||||||| Sbjct 7303 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATATGATTCAA 7362 Query 235 CCTCAAACCCATTTGA 250 || || |||||||||| Sbjct 7363 CCCCAGACCCATTTGA 7378 >gb|AY582139.1| Panax ginseng chloroplast, complete genome Length=156318 Score = 255 bits (282), Expect = 9e-66 Identities = 214/260 (82%), Gaps = 12/260 (5%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||| |||||||||||||||||||||||||||||||||| | || |||| Sbjct 83269 AAATGGGTGGAGTAACAGAAAATATAGCCAGAAAGGCTATTTCAATAGCATCGTCTAAAA 83210 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| | ||| ||||| |||| |||| |||| | || Sbjct 83209 TGCCTATACGAACTCAATTCATTATTTCGGCATAAAAATGGAGAATCAAAGGAAATAGGT 83150 Query 121 TTTTTGGATGaaaaaaaaa--aaTTTCAGGT--TTCTTTTTTGTTTTGAATAAACAACAt 176 || | || ||||||||| |||| ||||| | ||| || ||||| | |||||| || Sbjct 83149 CTTGAGAATTAAAAAAAAAACAATTGCAGGTACTGATTTATTTTTTTGGACAAACAATAT 83090 Query 177 ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT------AAAAAATGATATGAT 230 || |||||| ||||||| |||||||||||| || |||| ||||||||||||||| Sbjct 83089 TTCTTTTTT--CTTCGCCCTTTGCATTGAAAGAATAGATTAAAAAAAAAAATGATATGAT 83032 Query 231 TCAACCTCAAACCCATTTGA 250 ||||||||| |||| ||||| Sbjct 83031 TCAACCTCAGACCCTTTTGA 83012 >emb|AJ271079.3| Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length=165728 Score = 248 bits (274), Expect = 1e-63 Identities = 214/261 (82%), Gaps = 17/261 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | ||||| ||||||||||||||||||||||| ||||| ||||| || || |||| Sbjct 86355 AAATGGGTGGAGTCGCAGAAAATATAGCCAGAAAGGCGATTTCTATAGCAGCCTCGAAAA 86296 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||||||||||||||| || |||||| | ||||||| |||| Sbjct 86295 TGCCTATACGAACTCAATTCATTATTTCAGGATAGGAACGTAGAATC-AAAGAAAAAAGT 86237 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACA----- 175 || |||| |||||| | || | || |||||||| |||| | || ||| | Sbjct 86236 CTTAGGGAT---AAAAAACAGTTGCGAGTGTCTTTTTTTTTTT--ACAACCAATATTTCT 86182 Query 176 -tttttttttttACTTC-GCCT----TTTGCATTGAAAAAACAGATAAAAAATGATATGA 229 |||||||||||||||| || |||||||||||| ||||||| ||||||||||||| Sbjct 86181 TTTTTTTTTTTTACTTCATTCTTTACTTTGCATTGAAAGAACAGATTAAAAATGATATGA 86122 Query 230 TTCAACCTCAAACCCATTTGA 250 ||||||||||||||| ||||| Sbjct 86121 TTCAACCTCAAACCCGTTTGA 86101 >dbj|AB514637.1| Fragaria x ananassa chloroplast gene for ribosomal protein L16, partial cds, cultivar: Hood Length=496 Score = 246 bits (272), Expect = 5e-63 Identities = 186/215 (87%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 AAATGAGCGGAGTGGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTC-----AGGATAGAAATGTAGAACCAAAAGAAA 115 ||||||||||||||||||||||| |||| ||||||| |||||| ||| ||| |||| Sbjct 325 TGCCTATACGAACTCAATTCATTCTTTCGGTATAGGATAGGAATGTATAACAAAAGGAAA 384 Query 116 GAAGTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTT-TTTTGTTTTGAATAAACAAC 174 ||| |||||| ||| ||||||| |||| ||||||||| |||||||||||| |||||| Sbjct 385 GAA-TTTTTTTGAT--AAAAAAACAATTGTAGGTTTCTTGTTTTGTTTTGAACAAACAAT 441 Query 175 AtttttttttttACTTCGCCTTTTGCATTGAAAAA 209 |||| |||||| ||| || ||| ||||| |||| Sbjct 442 ATTTCTTTTTT---TTCACCCTTTACATTGCAAAA 473 >dbj|AB514636.1| Fragaria x ananassa chloroplast gene for ribosomal protein L16, partial cds, cultivar: Totem Length=497 Score = 246 bits (272), Expect = 5e-63 Identities = 186/215 (87%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 AAATGAGCGGAGTGGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTC-----AGGATAGAAATGTAGAACCAAAAGAAA 115 ||||||||||||||||||||||| |||| ||||||| |||||| ||| ||| |||| Sbjct 325 TGCCTATACGAACTCAATTCATTCTTTCGGTATAGGATAGGAATGTATAACAAAAGGAAA 384 Query 116 GAAGTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTT-TTTTGTTTTGAATAAACAAC 174 ||| |||||| ||| ||||||| |||| ||||||||| |||||||||||| |||||| Sbjct 385 GAA-TTTTTTTGAT--AAAAAAACAATTGTAGGTTTCTTGTTTTGTTTTGAACAAACAAT 441 Query 175 AtttttttttttACTTCGCCTTTTGCATTGAAAAA 209 |||| |||||| ||| || ||| ||||| |||| Sbjct 442 ATTTCTTTTTT---TTCACCCTTTACATTGCAAAA 473 >dbj|AB514635.1| Fragaria x ananassa chloroplast gene for ribosomal protein L16, partial cds, cultivar: Tochiotome Length=497 Score = 246 bits (272), Expect = 5e-63 Identities = 186/215 (87%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 AAATGAGCGGAGTGGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTC-----AGGATAGAAATGTAGAACCAAAAGAAA 115 ||||||||||||||||||||||| |||| ||||||| |||||| ||| ||| |||| Sbjct 325 TGCCTATACGAACTCAATTCATTCTTTCGGTATAGGATAGGAATGTATAACAAAAGGAAA 384 Query 116 GAAGTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTT-TTTTGTTTTGAATAAACAAC 174 ||| |||||| ||| ||||||| |||| ||||||||| |||||||||||| |||||| Sbjct 385 GAA-TTTTTTTGAT--AAAAAAACAATTGTAGGTTTCTTGTTTTGTTTTGAACAAACAAT 441 Query 175 AtttttttttttACTTCGCCTTTTGCATTGAAAAA 209 |||| |||||| ||| || ||| ||||| |||| Sbjct 442 ATTTCTTTTTT---TTCACCCTTTACATTGCAAAA 473 >dbj|AB514634.1| Fragaria x ananassa chloroplast gene for ribosomal protein L16, partial cds, cultivar: Sagahonoka Length=497 Score = 246 bits (272), Expect = 5e-63 Identities = 186/215 (87%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 AAATGAGCGGAGTGGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTC-----AGGATAGAAATGTAGAACCAAAAGAAA 115 ||||||||||||||||||||||| |||| ||||||| |||||| ||| ||| |||| Sbjct 325 TGCCTATACGAACTCAATTCATTCTTTCGGTATAGGATAGGAATGTATAACAAAAGGAAA 384 Query 116 GAAGTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTT-TTTTGTTTTGAATAAACAAC 174 ||| |||||| ||| ||||||| |||| ||||||||| |||||||||||| |||||| Sbjct 385 GAA-TTTTTTTGAT--AAAAAAACAATTGTAGGTTTCTTGTTTTGTTTTGAACAAACAAT 441 Query 175 AtttttttttttACTTCGCCTTTTGCATTGAAAAA 209 |||| |||||| ||| || ||| ||||| |||| Sbjct 442 ATTTCTTTTTT---TTCACCCTTTACATTGCAAAA 473 >dbj|AB514633.1| Fragaria x ananassa chloroplast gene for ribosomal protein L16, partial cds, cultivar: Amaou Length=497 Score = 246 bits (272), Expect = 5e-63 Identities = 186/215 (87%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 AAATGAGCGGAGTGGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTC-----AGGATAGAAATGTAGAACCAAAAGAAA 115 ||||||||||||||||||||||| |||| ||||||| |||||| ||| ||| |||| Sbjct 325 TGCCTATACGAACTCAATTCATTCTTTCGGTATAGGATAGGAATGTATAACAAAAGGAAA 384 Query 116 GAAGTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTT-TTTTGTTTTGAATAAACAAC 174 ||| |||||| ||| ||||||| |||| ||||||||| |||||||||||| |||||| Sbjct 385 GAA-TTTTTTTGAT--AAAAAAACAATTGTAGGTTTCTTGTTTTGTTTTGAACAAACAAT 441 Query 175 AtttttttttttACTTCGCCTTTTGCATTGAAAAA 209 |||| |||||| ||| || ||| ||||| |||| Sbjct 442 ATTTCTTTTTT---TTCACCCTTTACATTGCAAAA 473 >dbj|AB516320.1| Asparagus officinalis chloroplast gene for ribosomal protein L16, partial cds Length=500 Score = 244 bits (270), Expect = 2e-62 Identities = 195/228 (86%), Gaps = 14/228 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||| Sbjct 265 AAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAA--GAA 118 ||||||||||||| |||||||||| ||| |||||||||||||||| |||| |||| || Sbjct 325 TGCCTATACGAACCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGAAAGCGAT 384 Query 119 GTTT-TTTG-GATGaaaaaaaaa-aaTTTCAGGTTTC----TTTTTTGTTTTGAATAAAC 171 ||| |||| ||||||||||||| |||| || |||| |||||| ||||||| |||| Sbjct 385 CTTTGTTTGAGATGAAAAAAAAACAATTGTAGATTTCTTTTTTTTTTTTTTTGAA-AAAC 443 Query 172 AACA----tttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT 215 || | ||||||||||||||||||| |||||||||||| || |||| Sbjct 444 AATATTTCTTTTTTTTTTTACTTCGCCCTTTGCATTGAAAGAAAAGAT 491 >gb|HQ526161.1| Gossypium herbaceum clone NBRI_E2_396 simple sequence repeat marker, mRNA sequence Length=1781 Score = 242 bits (268), Expect = 6e-62 Identities = 215/262 (82%), Gaps = 16/262 (6%) Strand=Plus/Plus Query 1 AAATGAGC-GGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAA 59 |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 935 AAATGAGCCGGAGTAGCCGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCGTCAAAA 994 Query 60 ATGCCTAT-ACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAA 118 |||||||| | ||||||||||||||||||||||||| ||| |||||||||| ||||||| Sbjct 995 ATGCCTATNAAAAACTCAATTCATTATTTCAGGATAGGAATATAGAACCAAAGGAAAGAA 1054 Query 119 GT----TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAAC 174 || | | ||| ||||||| |||| | ||| | ||||| |||||| |||||| Sbjct 1055 GTCTTGTCTNTGGGAATAAAAAAACAATTGCGAGTTCCCTTTTTTTTTTGANCAAACAAT 1114 Query 175 AtttttttttttACTTCG-CCTT--TTGCATTGAAAAAACAGA--TAAAAAATGATATGA 229 |||| |||||| ||||| |||| || ||||||||||| ||| | ||||||| | Sbjct 1115 ATTTCTTTTTTNTCTTCGTCCTTTGTTACATTGAAAAAAGAGATTTCAAAAATG----NA 1170 Query 230 TTCAACCTCAAACCCAT-TTGA 250 |||||||||| |||||| |||| Sbjct 1171 TTCAACCTCAGACCCATNTTGA 1192 >gb|EU262889.1| Oenothera biennis chloroplast, complete genome Length=164807 Score = 242 bits (268), Expect = 6e-62 Identities = 213/261 (82%), Gaps = 16/261 (6%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | ||||| ||||||||||||||||||||||| ||||| ||||| || || |||| Sbjct 85999 AAATGGGTGGAGTCGCAGAAAATATAGCCAGAAAGGCGATTTCTATAGCAGCCTCGAAAA 85940 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||||||||||||||| || |||||| | ||||||| |||| Sbjct 85939 TGCCTATACGAACTCAATTCATTATTTCAGGATAGGAACGTAGAATC-AAAGAAAAAAGT 85881 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACA----- 175 || |||| |||||| | || | || | |||||| |||| | || ||| | Sbjct 85880 CTTAGGGAT---AAAAAACAGTTGCGAGTGT-TTTTTTTTTTTTTACAACCAATATTTCT 85825 Query 176 -tttttttttttACTTC-GCCT----TTTGCATTGAAAAAACAGATAAAAAATGATATGA 229 |||||||||||||||| || |||||||||||| ||||||| ||||||||||||| Sbjct 85824 TTTTTTTTTTTTACTTCATTCTTTACTTTGCATTGAAAGAACAGATTAAAAATGATATGA 85765 Query 230 TTCAACCTCAAACCCATTTGA 250 ||||||||||||||| ||||| Sbjct 85764 TTCAACCTCAAACCCGTTTGA 85744 >dbj|AB514142.1| Carya illinoinensis chloroplast gene for ribosomal protein L16, partial cds Length=505 Score = 241 bits (266), Expect = 2e-61 Identities = 196/237 (83%), Gaps = 17/237 (7%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| ||||||||||||||||| ||||||||| ||||||||||||||||| ||| |||| Sbjct 262 AAATGGGCGGAGTAGCAGAAAATGTAGCCAGAAGGGCTATTTCAATAGCGGGATCCAAAA 321 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| Sbjct 322 TGCCTATACGAACTCAATTAATTATTTCAGGATAGGAATGTAGAACCAAAGGAAAGAAGT 381 Query 121 TTTTTGGATGaaaaaaaaa-aaTTTCAGGTTTCTTT-----------TTTGTTTTGAATA 168 ||| | |||||||||||| | || |||||||||| ||| ||||| | | Sbjct 382 CTTTGGAATGAAAAAAAAACACTTGTAGGTTTCTTTTTTTTTTTTTATTTATTTTGGACA 441 Query 169 AACAACA----tttttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAA 221 ||||| | ||||||||||||||||||| |||||| ||| | || |||||||| Sbjct 442 AACAATATCTCTTTTTTTTTTTACTTCGCCCTTTGCA-CAAAAGAGCAAATAAAAAA 497 >gb|EU262890.1| Oenothera glazioviana chloroplast, complete genome Length=165225 Score = 239 bits (264), Expect = 7e-61 Identities = 213/263 (81%), Gaps = 19/263 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | ||||| ||||||||||||||||||||||| ||||| ||||| || || |||| Sbjct 86626 AAATGGGTGGAGTCGCAGAAAATATAGCCAGAAAGGCGATTTCTATAGCAGCCTCGAAAA 86567 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| || |||||| | ||||||| |||| Sbjct 86566 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAACGTAGAATC-AAAGAAAAAAGT 86508 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACA----- 175 || |||| |||||| | || | || |||||||| |||| | || ||| | Sbjct 86507 CTTAGGGAT---AAAAAAGAGTTGCGAGTGTCTTTTTTTTTTT--ACAACCAATATTTCT 86453 Query 176 ---tttttttttttACTTC-GCCT----TTTGCATTGAAAAAACAGATAAAAAATGATAT 227 |||||||||||||||| || |||||||||||| ||||||| ||||||||||| Sbjct 86452 TTTTTTTTTTTTTTACTTCATTCTTTACTTTGCATTGAAAGAACAGATTAAAAATGATAT 86393 Query 228 GATTCAACCTCAAACCCATTTGA 250 ||||||||||||||||| ||||| Sbjct 86392 GATTCAACCTCAAACCCGTTTGA 86370 >gb|HQ526123.1| Gossypium herbaceum clone NBRI_D_3587 simple sequence repeat marker, mRNA sequence Length=310 Score = 237 bits (262), Expect = 3e-60 Identities = 188/222 (85%), Gaps = 9/222 (4%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 86 AAATGAGCGGAGTAGCCGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCGTCAAAAA 145 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||| Sbjct 146 TGCCTATAAAAACTCAATTCATTATTTCAGGATAGGAATATAGAACCAAAGGAAAGAAGT 205 Query 121 TTT---TTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAtt 177 || |||| ||||||| |||| | ||||| ||||| ||||| | |||||| ||| Sbjct 206 CTTGTCTTGGGAATAAAAAAACAATTGCGAGTTTCCTTTTTTTTTTG-ACAAACAATATT 264 Query 178 tttttttttACTTCGCCTTTTG----CATTGAAAAAACAGAT 215 | ||||||| ||||| | |||| |||||||||| |||| Sbjct 265 TCTTTTTTT-CTTCGTCCTTTGTTACAATTGAAAAAAGAGAT 305 >dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length=150519 Score = 237 bits (262), Expect = 3e-60 Identities = 212/258 (82%), Gaps = 16/258 (6%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||| |||| Sbjct 79172 AAATGGGCGGAGTCGCAGAAAATATAGCCAGAAAAGCTATTTCAATAGCAGCATCCAAAA 79113 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGA--- 117 |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| Sbjct 79112 TGCCTATACGAACTCAATTCATTATTTCAGGATAATAAT-TAGAACCAAAGGAAAGAGGT 79054 Query 118 --AGTTTTTTGGATGaaa--aaaaaaaaTTTCA--GGTTTCTTT-TTTGTTTTGAATAAA 170 || ||| | || ||| |||||||||| || || |||| ||| ||||||| | | Sbjct 79053 CTGGTCTTTCGTATAAAAACAAAAAAAATTGCAATTGTAACTTTCTTTTTTTTGAACACA 78994 Query 171 CAACAtttttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGAT 230 || | ||||||||||||||| ||||| || | || || ||||||||||||||| Sbjct 78993 GAATA-TTTTTTTTTTACTTCAACTTTTTGTTT---TAGACGGA-AAAAAATGATATGAT 78939 Query 231 TCAACCTCAAACCCATTT 248 |||||||||||||||||| Sbjct 78938 TCAACCTCAAACCCATTT 78921 >gb|HQ526417.1| Gossypium herbaceum clone NBRI_C2_548-2 simple sequence repeat marker, mRNA sequence Length=1596 Score = 235 bits (260), Expect = 9e-60 Identities = 218/264 (83%), Gaps = 17/264 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGT-AGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATC-AAA 58 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||| Sbjct 565 AAATGAGCGGAGTNAGCCGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCGTCAAAA 624 Query 59 AATGCCTATACGAAC-TCAATTC-ATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAG 116 |||||||||| ||| ||||||| ||||||||||||||| ||| |||||||||| ||||| Sbjct 625 AATGCCTATAAAAACNTCAATTCNATTATTTCAGGATAGGAATATAGAACCAAAGGAAAG 684 Query 117 AAGT----TTTTTGGATGaaaaaaaaaaaTTTC-AGGTTTCTTTTTTGTTTTGAATAAAC 171 |||| | || ||| ||||||| |||| | || || ||||||| |||| | |||| Sbjct 685 AAGTCTTGTCTTGGGAANTAAAAAAACAATTGCGAGTTTCCTTTTTTTTTTTTGACAAAC 744 Query 172 AACAtttttttttttACTTCG--CCTT--TTGCATTG-AAAAAACAGATAAAAAATGATA 226 || |||| ||||||| ||||| |||| || ||||| |||||| |||| ||| | | Sbjct 745 AATATTTCTTTTTTT-CTTCGTCCCTTTGTTACATTGAAAAAAAGAGATTTCAAA--AAA 801 Query 227 TGATTCAACCTCAAACCCATTTGA 250 ||||||||||||| |||||||||| Sbjct 802 TGATTCAACCTCAGACCCATTTGA 825 >gb|HQ524879.1| Gossypium herbaceum clone NBRI_C2_548-1 simple sequence repeat marker, mRNA sequence Length=1596 Score = 235 bits (260), Expect = 9e-60 Identities = 218/264 (83%), Gaps = 17/264 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGT-AGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATC-AAA 58 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||| Sbjct 565 AAATGAGCGGAGTNAGCCGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCGTCAAAA 624 Query 59 AATGCCTATACGAAC-TCAATTC-ATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAG 116 |||||||||| ||| ||||||| ||||||||||||||| ||| |||||||||| ||||| Sbjct 625 AATGCCTATAAAAACNTCAATTCNATTATTTCAGGATAGGAATATAGAACCAAAGGAAAG 684 Query 117 AAGT----TTTTTGGATGaaaaaaaaaaaTTTC-AGGTTTCTTTTTTGTTTTGAATAAAC 171 |||| | || ||| ||||||| |||| | || || ||||||| |||| | |||| Sbjct 685 AAGTCTTGTCTTGGGAANTAAAAAAACAATTGCGAGTTTCCTTTTTTTTTTTTGACAAAC 744 Query 172 AACAtttttttttttACTTCG--CCTT--TTGCATTG-AAAAAACAGATAAAAAATGATA 226 || |||| ||||||| ||||| |||| || ||||| |||||| |||| ||| | | Sbjct 745 AATATTTCTTTTTTT-CTTCGTCCCTTTGTTACATTGAAAAAAAGAGATTTCAAA--AAA 801 Query 227 TGATTCAACCTCAAACCCATTTGA 250 ||||||||||||| |||||||||| Sbjct 802 TGATTCAACCTCAGACCCATTTGA 825 >dbj|AB479517.1| Prunus x yedoensis chloroplast rpl16 gene for ribosomal protein L16, partial cds Length=503 Score = 233 bits (258), Expect = 3e-59 Identities = 183/219 (84%), Gaps = 15/219 (7%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 265 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAGGGCTATTTCAATAGCGGCATCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||| |||| |||||| |||||||| |||| ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTCTTTCGGGATAGGGATGTAGAAACAAAGGAAAGGGGT 384 Query 121 TTTTTGGATGaa---------aaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAAC 171 ||||| ||||| ||||||||||| |||| |||||||||||||| ||| Sbjct 385 CTTTTGTATGAAAAAAAAAATAAAAAAAAATTGCAGG----TTTTTTGTTTTGAACAAAT 440 Query 172 AACAtt--tttttttttACTTCGCCTTTTGCATTGAAAA 208 || ||| |||||||||| || | | |||||||||||| Sbjct 441 AATATTTCTTTTTTTTTATTTAGACCCTTGCATTGAAAA 479 >gb|EU262887.1| Oenothera argillicola chloroplast, complete genome Length=165055 Score = 232 bits (256), Expect = 1e-58 Identities = 213/266 (80%), Gaps = 20/266 (8%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | ||||| ||||||||||||||||||||||| ||||| ||||| || || |||| Sbjct 85543 AAATGGGTGGAGTCGCAGAAAATATAGCCAGAAAGGCGATTTCTATAGCAGCCTCGAAAA 85484 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| || |||||| | ||||||| |||| Sbjct 85483 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAACGTAGAATC-AAAGAAAAAAGT 85425 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGT---TTCTTTTTTGTTTTGAATAAACAACA-- 175 || |||| |||||| | || | || || |||||| |||| | || ||| | Sbjct 85424 CTTAGGGAT---AAAAAACAGTTGCGAGTGTCTTTTTTTTTTTTTTTTACAACCAATATT 85368 Query 176 ------tttttttttttACTTC-GCCT----TTTGCATTGAAAAAACAGATAAAAAATGA 224 |||||||||||||||| || |||||||||||| ||||||| |||||||| Sbjct 85367 TCTTTTTTTTTTTTTTTACTTCATTCTTTACTTTGCATTGAAAGAACAGATTAAAAATGA 85308 Query 225 TATGATTCAACCTCAAACCCATTTGA 250 |||||||||||||||||||| ||||| Sbjct 85307 TATGATTCAACCTCAAACCCGTTTGA 85282 >gb|EU118126.1| Ipomoea purpurea chloroplast, complete genome Length=162046 Score = 232 bits (256), Expect = 1e-58 Identities = 212/260 (82%), Gaps = 16/260 (6%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||| || |||| || ||||||| ||||||||||||||| ||||| |||| Sbjct 83958 AAATGGGTGGAGTAACAAAAAAGATTGCCAGAAGGGCTATTTCAATAGCAGCATCCAAAA 83899 Query 61 TGCCTATACGAACTCAATTCATTATTTCAG-GATAG-----AAATGTAGAACCAAAAGAA 114 |||||||||||||||||||||||| ||| | ||||| |||| || ||||| ||| Sbjct 83898 TGCCTATACGAACTCAATTCATTAGTTCCGAGATAGAAGAAAAATCTAAAACCACCCGAA 83839 Query 115 AGAAGTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTT-TGTTT-TGAATAAACA 172 || | | || | |||||| ||||| | ||||||||||||| ||||| || | ||| | Sbjct 83838 AGGAATCTTAGGAATGAAACAAAAACA---CAGGTTTCTTTTTCTGTTTGTGGACAAAAA 83782 Query 173 ACAtttttttttttACTTCGCCTTTTGCATTG-AAAAAACAG---ATAAAAAATGATATG 228 | |||| ||||||| ||||||| ||||||||| ||||||||| | ||||||||||||| Sbjct 83781 ATATTTCTTTTTTT-CTTCGCCCTTTGCATTGTAAAAAACAGAGTAAAAAAAATGATATG 83723 Query 229 ATTCAACCTCAAACCCATTT 248 ||||||||||| |||||||| Sbjct 83722 ATTCAACCTCAGACCCATTT 83703 >gb|AF536225.1| Vigna angularis chloroplast S10B operon, partial sequence Length=6550 Score = 232 bits (256), Expect = 1e-58 Identities = 209/261 (80%), Gaps = 19/261 (7%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||| ||||||||||||| |||||||||||||||||||| |||| |||| Sbjct 5308 AAATGGGTGGAGTACCAGAAAATATAGCAAGAAAGGCTATTTCAATAGCATCATCCAAAA 5367 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||| ||||||||||||||||||||||||||||| || ||||||||| |||| | || Sbjct 5368 TGCCGATACGAACTCAATTCATTATTTCAGGATAATAAAAGAGAACCAAAGGAAATAGGT 5427 Query 121 TTTTTGGATGaaaaaaaaa-----aaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACA 175 ||| | ||||||| |||| |||| ||||| ||||||| ||||||| | | || | Sbjct 5428 CTTTAGAATGAAAAGAAAAAAGGCAATTATAGGTTCCTTTTTT-TTTTGAACACAAAATA 5486 Query 176 ttttt------ttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGA 229 ||||| ||||||| || |||| ||||||| || | |||||||||||||| Sbjct 5487 TTTTTACTTCCTTTTTTAGTT----TTTTAGATTGAAATAATA---AAAAAATGATATGA 5539 Query 230 TTCAACCTCAAACCCATTTGA 250 ||||||||||||| ||||||| Sbjct 5540 TTCAACCTCAAACTCATTTGA 5560 >gb|EF640709.1| Prunus dulcis clone Pdbcs-E57 putative ribosomal protein L16 mRNA, partial cds Length=320 Score = 230 bits (254), Expect = 4e-58 Identities = 178/210 (85%), Gaps = 10/210 (5%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || | Sbjct 117 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAGGGCAATTTCAATAGCGGCATCCAAGA 176 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||| |||| |||||| |||||||| |||| ||||| || Sbjct 177 TGCCTATACGAACTCAATTCATTCTTTCGGGATAGGGATGTAGAAACAAAGGAAAGGGGT 236 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAttttt 180 ||||| ||| ||||||||||| |||| |||||||||||||| ||| || |||| | Sbjct 237 CTTTTGTATG--AAAAAAAAATTGCAGG----TTTTTTGTTTTGAACAAATAATATTTCT 290 Query 181 ttttttACTTCGCCTTTTGCATTGAAAAAA 210 ||||||| | | |||||||||||||| Sbjct 291 TTTTTTA----GACCCTTGCATTGAAAAAA 316 >dbj|AB514614.1| Vitis labrusca x Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Black Queen Length=481 Score = 228 bits (252), Expect = 1e-57 Identities = 188/225 (84%), Gaps = 13/225 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||||| || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGGCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAtt- 177 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| ||| Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 178 -tttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAA 221 ||||||||| ||||| |||||||||||||| | |||||||| Sbjct 436 CTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAA 480 >dbj|AB514613.1| Vitis labrusca x Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: King Delaware Length=481 Score = 228 bits (252), Expect = 1e-57 Identities = 188/225 (84%), Gaps = 13/225 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||||| || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGGCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAtt- 177 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| ||| Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 178 -tttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAA 221 ||||||||| ||||| |||||||||||||| | |||||||| Sbjct 436 CTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAA 480 >dbj|AB514612.1| Vitis labrusca chloroplast gene for ribosomal protein L16, partial cds, cultivar: Delaware Length=481 Score = 228 bits (252), Expect = 1e-57 Identities = 188/225 (84%), Gaps = 13/225 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||||| || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGGCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAtt- 177 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| ||| Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 178 -tttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAA 221 ||||||||| ||||| |||||||||||||| | |||||||| Sbjct 436 CTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAA 480 >gb|EU262891.1| Oenothera parviflora chloroplast, complete genome Length=163365 Score = 228 bits (252), Expect = 1e-57 Identities = 214/268 (80%), Gaps = 22/268 (8%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | ||||| ||||||||||||||||||||||| ||||| ||||| || || |||| Sbjct 84761 AAATGGGTGGAGTCGCAGAAAATATAGCCAGAAAGGCGATTTCTATAGCAGCCTCGAAAA 84702 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| || |||||| | ||||||| |||| Sbjct 84701 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAACGTAGAATC-AAAGAAAAAAGT 84643 Query 121 TTTTTGGATGaaaaaaaaaaaTTTC-AG-----GTTTCTTTTTTGTTTTGAATAAACAAC 174 || |||| |||||| | || | || ||| |||||| |||| | || ||| Sbjct 84642 CTTAGGGAT---AAAAAACAGTTGCGAGTGTCTTTTTTTTTTTTTTTTTTTACAACCAAT 84586 Query 175 A-------tttttttttttACTTC-GCCT----TTTGCATTGAAAAAACAGATAAAAAAT 222 | |||||||||||||||| || |||||||||||| ||||||| |||||| Sbjct 84585 ATTTCTTTTTTTTTTTTTTACTTCATTCTTTACTTTGCATTGAAAGAACAGATTAAAAAT 84526 Query 223 GATATGATTCAACCTCAAACCCATTTGA 250 |||||||||||||||||||||| ||||| Sbjct 84525 GATATGATTCAACCTCAAACCCGTTTGA 84498 >gb|M60179.1|OBECPRPA O.ammophila ribosomal protein L14 and L16 (rpl14, rpl16) genes, 3' end and 5' end Length=542 Score = 228 bits (252), Expect = 1e-57 Identities = 214/268 (80%), Gaps = 22/268 (8%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | ||||| ||||||||||||||||||||||| ||||| ||||| || || |||| Sbjct 363 AAATGGGTGGAGTCGCAGAAAATATAGCCAGAAAGGCGATTTCTATAGCAGCCTCGAAAA 304 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| || |||||| | ||||||| |||| Sbjct 303 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAACGTAGAATC-AAAGAAAAAAGT 245 Query 121 TTTTTGGATGaaaaaaaaaaaTTTC-AG-----GTTTCTTTTTTGTTTTGAATAAACAAC 174 || |||| |||||| | || | || ||| |||||| |||| | || ||| Sbjct 244 CTTAGGGAT---AAAAAACAGTTGCGAGTGTCTTTTTTTTTTTTTTTTTTTACAACCAAT 188 Query 175 A-------tttttttttttACTTC-GCCT----TTTGCATTGAAAAAACAGATAAAAAAT 222 | |||||||||||||||| || |||||||||||| ||||||| |||||| Sbjct 187 ATTTCTTTTTTTTTTTTTTACTTCATTCTTTACTTTGCATTGAAAGAACAGATTAAAAAT 128 Query 223 GATATGATTCAACCTCAAACCCATTTGA 250 |||||||||||||||||||||| ||||| Sbjct 127 GATATGATTCAACCTCAAACCCGTTTGA 100 >emb|FN997650.2| Olea europaea subsp. europaea complete chloroplast genome, isolate Haut Atlas 1 Length=155875 Score = 226 bits (250), Expect = 5e-57 Identities = 200/250 (80%), Gaps = 20/250 (8%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||| | ||||||||||| |||| ||||||||||||||| ||||| |||| Sbjct 83839 AAATGGGTGGAGTAACCGAAAATATAGCTAGAAGGGCTATTTCAATAGCAGCATCCAAAA 83780 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | | Sbjct 83779 TGCCTATACGAACTCAATTCATTATTTCAGGATAAAAATGTAGAACCAACAGAAATGAAT 83720 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAttttt 180 || |||||||| |||||||| ||||| | ||| || ||| | Sbjct 83719 CTTGGGGATGAAA--------------GTTTCTTT----TTTTGGACAAAAAATATTCCT 83678 Query 181 ttttttACTTCGCCTTTTGCATTGAAAAAACAGA-TAAAAAA-TGATATGATTCAACCTC 238 |||||| |||| | ||||||||| || || ||| ||||||| ||||||||||||||||| Sbjct 83677 TTTTTTTCTTCATCCTTTGCATTGGAAGAATAGACTAAAAAATTGATATGATTCAACCTC 83618 Query 239 AAACCCATTT 248 | |||||||| Sbjct 83617 AGACCCATTT 83608 >gb|GU931818.1| Olea europaea cultivar Frantoio chloroplast, complete genome Length=155889 Score = 226 bits (250), Expect = 5e-57 Identities = 200/250 (80%), Gaps = 20/250 (8%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||| | ||||||||||| |||| ||||||||||||||| ||||| |||| Sbjct 83842 AAATGGGTGGAGTAACCGAAAATATAGCTAGAAGGGCTATTTCAATAGCAGCATCCAAAA 83783 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | | Sbjct 83782 TGCCTATACGAACTCAATTCATTATTTCAGGATAAAAATGTAGAACCAACAGAAATGAAT 83723 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAttttt 180 || |||||||| |||||||| ||||| | ||| || ||| | Sbjct 83722 CTTGGGGATGAAA--------------GTTTCTTT----TTTTGGACAAAAAATATTCCT 83681 Query 181 ttttttACTTCGCCTTTTGCATTGAAAAAACAGA-TAAAAAA-TGATATGATTCAACCTC 238 |||||| |||| | ||||||||| || || ||| ||||||| ||||||||||||||||| Sbjct 83680 TTTTTTTCTTCATCCTTTGCATTGGAAGAATAGACTAAAAAATTGATATGATTCAACCTC 83621 Query 239 AAACCCATTT 248 | |||||||| Sbjct 83620 AGACCCATTT 83611 >gb|GU228899.1| Olea europaea cultivar Bianchera chloroplast, complete genome Length=155872 Score = 226 bits (250), Expect = 5e-57 Identities = 200/250 (80%), Gaps = 20/250 (8%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||| | ||||||||||| |||| ||||||||||||||| ||||| |||| Sbjct 83791 AAATGGGTGGAGTAACCGAAAATATAGCTAGAAGGGCTATTTCAATAGCAGCATCCAAAA 83732 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | | Sbjct 83731 TGCCTATACGAACTCAATTCATTATTTCAGGATAAAAATGTAGAACCAACAGAAATGAAT 83672 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAttttt 180 || |||||||| |||||||| ||||| | ||| || ||| | Sbjct 83671 CTTGGGGATGAAA--------------GTTTCTTT----TTTTGGACAAAAAATATTCCT 83630 Query 181 ttttttACTTCGCCTTTTGCATTGAAAAAACAGA-TAAAAAA-TGATATGATTCAACCTC 238 |||||| |||| | ||||||||| || || ||| ||||||| ||||||||||||||||| Sbjct 83629 TTTTTTTCTTCATCCTTTGCATTGGAAGAATAGACTAAAAAATTGATATGATTCAACCTC 83570 Query 239 AAACCCATTT 248 | |||||||| Sbjct 83569 AGACCCATTT 83560 >gb|EU196765.1| Phaseolus vulgaris chloroplast, complete genome Length=150284 Score = 226 bits (250), Expect = 5e-57 Identities = 205/254 (81%), Gaps = 17/254 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||| ||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 77668 AAATGGGTGGAGTACCAGAAAATATAGCAAGAAAGGCTATTTCAATAGCATCATCAAAAA 77609 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGAT-AGAAATGTAGAACCAAAAGAAAGAAG 119 |||| |||||||||||||||||||||||||||| | ||||| ||||||||| |||| | | Sbjct 77608 TGCCGATACGAACTCAATTCATTATTTCAGGATAATAAATG-AGAACCAAAGGAAATAGG 77550 Query 120 TTTTTTGGATGaaaaaaaaa-----aaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAAC 174 ||| | ||||||| |||| ||| || || ||||||| ||||||| | |||| Sbjct 77549 GCTTTAGAATGAAAACAAAAAAGGCAATGATAGATTCCTTTTTT-TTTTGAACACACAA- 77492 Query 175 AtttttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATTCAA 234 | |||||||||| |||| ||||||| || | ||||||||||||||||||| Sbjct 77491 -----TATTTTTACTTCCTTTTTTAGATTGAAATAATA---AAAAAATGATATGATTCAA 77440 Query 235 CCTCAAACCCATTT 248 |||||||| ||||| Sbjct 77439 CCTCAAACTCATTT 77426 >gb|AC208048.1| Populus trichocarpa clone JGIACSB05-H15, complete sequence Length=37052 Score = 226 bits (250), Expect = 5e-57 Identities = 206/256 (80%), Gaps = 9/256 (4%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||| |||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 10225 AAATGGGCGGGGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCAGCGTCCAAAA 10166 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||||||| ||||| ||| ||||| |||||||| | | Sbjct 10165 TGCCTATACGAACTCAATTCATTATTTTGAGATAGGAATACAGAACTAAAAGAAAAAGGC 10106 Query 121 TTTTTGGATGaaaaaa---aaaaaTTTC-AGGTTTCTTTTTTGTTTTGAATAAACAACAt 176 ||| | ||||||| || |||| ||| |||||||||||| | |||||| || Sbjct 10105 CTTTGTTAGGAAAAAATTCGCAAGTTTCTTTTTTTTTTTTTTGTTTTGGACAAACAATAT 10046 Query 177 ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT--AAAAAATGATATGATTCAA 234 || |||||| || || ||| |||||||| ||||||| |||||| ||||||| ||| Sbjct 10045 TTCTTTTTT---TTGCCCCTTTCCATTGAAATAACAGATTAAAAAAAGAATATGATCCAA 9989 Query 235 CCTCAAACCCATTTGA 250 |||| |||||||||| Sbjct 9988 TCTCAGACCCATTTGA 9973 >gb|EF489041.1| Populus trichocarpa chloroplast, complete genome Length=157033 Score = 226 bits (250), Expect = 5e-57 Identities = 206/256 (80%), Gaps = 9/256 (4%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||| |||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 82409 AAATGGGCGGGGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCAGCGTCCAAAA 82350 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||||||| ||||| ||| ||||| |||||||| | | Sbjct 82349 TGCCTATACGAACTCAATTCATTATTTTGAGATAGGAATACAGAACTAAAAGAAAAAGGC 82290 Query 121 TTTTTGGATGaaaaaa---aaaaaTTTC-AGGTTTCTTTTTTGTTTTGAATAAACAACAt 176 ||| | ||||||| || |||| ||| |||||||||||| | |||||| || Sbjct 82289 CTTTGTTAGGAAAAAATTCGCAAGTTTCTTTTTTTTTTTTTTGTTTTGGACAAACAATAT 82230 Query 177 ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT--AAAAAATGATATGATTCAA 234 || |||||| || || ||| |||||||| ||||||| |||||| ||||||| ||| Sbjct 82229 TTCTTTTTT---TTGCCCCTTTCCATTGAAATAACAGATTAAAAAAAGAATATGATCCAA 82173 Query 235 CCTCAAACCCATTTGA 250 |||| |||||||||| Sbjct 82172 TCTCAGACCCATTTGA 82157 >gb|DQ886273.1| Phaseolus vulgaris cultivar Negro Jamapa chloroplast, complete genome Length=150285 Score = 226 bits (250), Expect = 5e-57 Identities = 205/254 (81%), Gaps = 17/254 (7%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||| ||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 2159 AAATGGGTGGAGTACCAGAAAATATAGCAAGAAAGGCTATTTCAATAGCATCATCAAAAA 2218 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGAT-AGAAATGTAGAACCAAAAGAAAGAAG 119 |||| |||||||||||||||||||||||||||| | ||||| ||||||||| |||| | | Sbjct 2219 TGCCGATACGAACTCAATTCATTATTTCAGGATAATAAATG-AGAACCAAAGGAAATAGG 2277 Query 120 TTTTTTGGATGaaaaaaaaa-----aaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAAC 174 ||| | ||||||| |||| ||| || || ||||||| ||||||| | |||| Sbjct 2278 GCTTTAGAATGAAAACAAAAAAGGCAATGATAGATTCCTTTTTT-TTTTGAACACACAA- 2335 Query 175 AtttttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATTCAA 234 | |||||||||| |||| ||||||| || | ||||||||||||||||||| Sbjct 2336 -----TATTTTTACTTCCTTTTTTAGATTGAAATAATA---AAAAAATGATATGATTCAA 2387 Query 235 CCTCAAACCCATTT 248 |||||||| ||||| Sbjct 2388 CCTCAAACTCATTT 2401 >dbj|AP008956.1| Populus alba chloroplast DNA, complete genome Length=156505 Score = 226 bits (250), Expect = 5e-57 Identities = 205/255 (80%), Gaps = 11/255 (4%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||| ||||||||||||||||||| |||||||||||||||||| || || |||| Sbjct 81925 AAATGGGCGGGGTAGCAGAAAATATAGCCAAAAAGGCTATTTCAATAGCAGCGTCCAAAA 81866 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||||||| ||||| ||| ||||| |||||||| | | Sbjct 81865 TGCCTATACGAACTCAATTCATTATTTTGAGATAGGAATACAGAACTAAAAGAAAAAGGC 81806 Query 121 TTTTTGGATGaaaaaa---aaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAtt 177 ||| | ||||||| || |||| ||| |||||||||||| | |||||| ||| Sbjct 81805 CTTTGTTAGGAAAAAATGCGCAAGTTTC---TTTTTTTTTTGTTTTGGACAAACAATATT 81749 Query 178 tttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT--AAAAAATGATATGATTCAAC 235 | |||||| || || ||| |||||||| ||||||| |||||| ||||||| ||| Sbjct 81748 TCTTTTTT---TTGCCCCTTTCCATTGAAATAACAGATTAAAAAAAGAATATGATCCAAT 81692 Query 236 CTCAAACCCATTTGA 250 |||| |||||||||| Sbjct 81691 CTCAGACCCATTTGA 81677 >gb|AC239142.1| Carica papaya BAC clone 20J12, complete sequence Length=108899 Score = 224 bits (248), Expect = 2e-56 Identities = 208/260 (80%), Gaps = 18/260 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||| | |||||| ||||||||||||| ||||||||||||||||| ||| ||||||| Sbjct 70363 AAATGAGTGTAGTAGCCGAAAATATAGCCAAAAAGGCTATTTCAATAGTGGCGTCAAAAA 70304 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACC--AAAAGAAAGAA 118 |||||||| ||||||||||||||||||||| ||||||||||||| | |||||||| || Sbjct 70303 TGCCTATAAAAACTCAATTCATTATTTCAGGGTAGAAATGTAGAATCATAAAAGAAATAA 70244 Query 119 GTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAA----- 173 || || || | ||||||||| || ||||||||| ||||| | ||| || Sbjct 70243 GTCTT-----AGAGATAAAAAAATTACAATTTTCTTTTT--TTTTG-ACAAAGAATATTT 70192 Query 174 CAtttttttttttACTTCGCCTTTTGCATTGAAAAAACAGA---TAAAAAATGATATGAT 230 | ||||| |||| |||| | | |||||||| ||| | ||| | ||||||||||||| Sbjct 70191 CTTTTTTCTTTTGACTTTGTCCTTTGCATTTAAAGAGAAGATTTTTAAAAATGATATGAG 70132 Query 231 TCAACCTCAAACCCATTTGA 250 ||||||| | |||||||||| Sbjct 70131 TCAACCTTAGACCCATTTGA 70112 >gb|BT098470.1| Soybean clone JCVI-FLGm-12D5 unknown mRNA Length=1240 Score = 224 bits (248), Expect = 2e-56 Identities = 204/255 (80%), Gaps = 19/255 (7%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||| ||| ||||||||||||| |||||||||||||||||||| |||| |||| Sbjct 748 AAATGGGCGGGGTACCAGAAAATATAGCAAGAAAGGCTATTTCAATAGCATCATCCAAAA 807 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||||||||||| || || |||||||||| |||||| || Sbjct 808 TGCCTATACGAACTCAATTCATTATTTCAGGGTAATAAATTAGAACCAAAGGAAAGAGGT 867 Query 121 TTTTTGGATGaaaaaaaaaaaT-----TTCAGGTTTCTTTTTTGTTTTGAATAAACAACA 175 ||| |||||||| ||||||| | ||||| |||| ||||||| | | || Sbjct 868 CTTTAAGATGAAAACAAAAAATGCAAATGTAGGTTCCTTT----TTTTGAACACAAAA-- 921 Query 176 tttttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATTCAAC 235 | |||||||||| | |||| | ||||| || | |||||||||||||||||||| Sbjct 922 ----TATTTTTACTTC-CATTTTTGACTGAAAGAATA---AAAAAATGATATGATTCAAC 973 Query 236 CTCAAACCCATTTGA 250 ||||||| ||||||| Sbjct 974 CTCAAACTCATTTGA 988 >dbj|AB514626.1| Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Neo Muscat Length=487 Score = 224 bits (248), Expect = 2e-56 Identities = 192/232 (83%), Gaps = 15/232 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGTCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATA 226 |||||||||| ||||| |||||||||||||| | || ||||||||||| Sbjct 436 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATA 487 >dbj|AB514625.1| Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Chardonnay Length=487 Score = 224 bits (248), Expect = 2e-56 Identities = 192/232 (83%), Gaps = 15/232 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGTCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATA 226 |||||||||| ||||| |||||||||||||| | || ||||||||||| Sbjct 436 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATA 487 >dbj|AB514624.1| Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Riesling Length=487 Score = 224 bits (248), Expect = 2e-56 Identities = 192/232 (83%), Gaps = 15/232 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGTCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATA 226 |||||||||| ||||| |||||||||||||| | || ||||||||||| Sbjct 436 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATA 487 >dbj|AB514623.1| Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Cabernet Sauvignon Length=487 Score = 224 bits (248), Expect = 2e-56 Identities = 192/232 (83%), Gaps = 15/232 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGTCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATA 226 |||||||||| ||||| |||||||||||||| | || ||||||||||| Sbjct 436 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATA 487 >dbj|AB514622.1| Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Riesling Forte Length=487 Score = 224 bits (248), Expect = 2e-56 Identities = 192/232 (83%), Gaps = 15/232 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGTCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATA 226 |||||||||| ||||| |||||||||||||| | || ||||||||||| Sbjct 436 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATA 487 >dbj|AB514621.1| Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Sauvignon Blanc Length=487 Score = 224 bits (248), Expect = 2e-56 Identities = 192/232 (83%), Gaps = 15/232 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGTCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATA 226 |||||||||| ||||| |||||||||||||| | || ||||||||||| Sbjct 436 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATA 487 >dbj|AB514620.1| Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Pinot Noir Length=487 Score = 224 bits (248), Expect = 2e-56 Identities = 192/232 (83%), Gaps = 15/232 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGTCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATA 226 |||||||||| ||||| |||||||||||||| | || ||||||||||| Sbjct 436 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATA 487 >dbj|AB514619.1| Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Muscat of Alexandria Length=487 Score = 224 bits (248), Expect = 2e-56 Identities = 192/232 (83%), Gaps = 15/232 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGTCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATA 226 |||||||||| ||||| |||||||||||||| | || ||||||||||| Sbjct 436 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATA 487 >dbj|AB514618.1| Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Longan Length=487 Score = 224 bits (248), Expect = 2e-56 Identities = 192/232 (83%), Gaps = 15/232 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGTCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATA 226 |||||||||| ||||| |||||||||||||| | || ||||||||||| Sbjct 436 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATA 487 >dbj|AB514617.1| Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Kaiji Length=487 Score = 224 bits (248), Expect = 2e-56 Identities = 192/232 (83%), Gaps = 15/232 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGTCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATA 226 |||||||||| ||||| |||||||||||||| | || ||||||||||| Sbjct 436 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATA 487 >dbj|AB514616.1| Vitis labrusca x Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Pione Length=487 Score = 224 bits (248), Expect = 2e-56 Identities = 192/232 (83%), Gaps = 15/232 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGTCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATA 226 |||||||||| ||||| |||||||||||||| | || ||||||||||| Sbjct 436 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATA 487 >dbj|AB514615.1| Vitis labrusca x Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Kyoho Length=487 Score = 224 bits (248), Expect = 2e-56 Identities = 192/232 (83%), Gaps = 15/232 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGTCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-AAAAAATGATA 226 |||||||||| ||||| |||||||||||||| | || ||||||||||| Sbjct 436 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAAATGATA 487 >gb|GQ893027.1| Vigna radiata cultivar kampangsan1 chloroplast, complete genome Length=151271 Score = 223 bits (246), Expect = 6e-56 Identities = 203/255 (80%), Gaps = 16/255 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||| ||||||||||||| |||||||||||||||||||| |||| |||| Sbjct 2166 AAATGGGTGGAGTACCAGAAAATATAGCAAGAAAGGCTATTTCAATAGCATCATCCAAAA 2225 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||| ||||||||||||||||||||||||||||| || |||| |||| |||| | || Sbjct 2226 TGCCGATACGAACTCAATTCATTATTTCAGGATAATAAAAGAGAATCAAAGGAAATAGGT 2285 Query 121 TTTTTGGATGaaaaaaaaa-----aaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACA 175 ||| | ||||||| |||| |||| ||||| |||||| ||||||| | | || Sbjct 2286 CTTTAGAATGAAAAGAAAAAAGGCAATTATAGGTTCCTTTTT--TTTTGAACACAAAA-- 2341 Query 176 tttttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATTCAAC 235 | |||||||||| |||| ||||||| || | |||||||||||||||||||| Sbjct 2342 ----TATTTTTACTTCCTTTTTTAGATTGAAATAATA---AAAAAATGATATGATTCAAC 2394 Query 236 CTCAAACCCATTTGA 250 ||||||| ||||||| Sbjct 2395 CTCAAACTCATTTGA 2409 >dbj|AB514627.1| Vitis vinifera chloroplast gene for ribosomal protein L16, partial cds, cultivar: Koshu Length=482 Score = 223 bits (246), Expect = 6e-56 Identities = 187/226 (83%), Gaps = 14/226 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| Sbjct 265 AAATGGGCGGAGTAGCAGAAAATATAGCTAGAAAAGCTATTTCAATAGCGTCGTCCAAAA 324 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||| |||||| ||| || || | ||||| || Sbjct 325 TGCCTATACGAACTCAATTCATTATTTCGGGATAGGAAT----AA--AAGAAAAAGAGGT 378 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTT--GTTTTGAATAAACAACAt-- 176 ||| ||||| |||||||||| |||||||||||||| ||||| | |||||| || Sbjct 379 CTTTGGGATG---AAAAAAAATTGCAGGTTTCTTTTTTTGATTTTGGACAAACAATATTT 435 Query 177 -ttttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAA 221 |||||||||| ||||| |||||||||||||| | |||||||| Sbjct 436 CTTTTTTTTTTCCTTCGTTCTTTGCATTGAAAAATCGAATAAAAAA 481 >gb|EU849490.1| Gonystylus bancanus chloroplast, partial genome Length=165110 Score = 223 bits (246), Expect = 6e-56 Identities = 208/257 (81%), Gaps = 18/257 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| ||||||| || ||||||||||||||||||||||||||||||| ||||| |||| Sbjct 85459 AAATGGGCGGAGTGGCCAAAAATATAGCCAGAAAGGCTATTTCAATAGCAGCATCCAAAA 85400 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAG--AACCAAAAGAAAGAA 118 |||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||| Sbjct 85399 TGCCTATAAAAACTCAATTCATTATTTCAGGATAGGAATATAGAAAACCAAAAGAAAGAG 85340 Query 119 GTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAtt- 177 || || | ||| ||||||| || || | || || ||||| | |||||| ||| Sbjct 85339 GTCTT----AGGAATCAAAAAAAATTGTGGAT--TTACTTTTTTTG-ACAAACAATATTT 85287 Query 178 -tttttttttACTTCG-CCTT--TTGCATTGAAAAAACAGATAAAAAATGATATGATTCA 233 ||||||||| ||| | |||| ||||||||||| || |||| |||| |||||||| Sbjct 85286 CTTTTTTTTTTCTTTGTCCTTTGTTGCATTGAAAGAAGAGATTCAAAA----ATGATTCA 85231 Query 234 ACCTCAAACCCATTTGA 250 |||||| |||||||||| Sbjct 85230 ACCTCAGACCCATTTGA 85214 >emb|X68048.1| Phaseolus vulgaris chloroplast DNA for tRNA-His gene region Length=1698 Score = 223 bits (246), Expect = 6e-56 Identities = 204/254 (80%), Gaps = 18/254 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||| ||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1542 AAATGGGTGGAGTACCAGAAAATATAGCAAGAAAGGCTATTTCAATAGCATCATCAAAAA 1483 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGAT-AGAAATGTAGAACCAAAAGAAAGAAG 119 |||| |||||||||||||||||||||||||||| | ||||| ||||||||| |||| | | Sbjct 1482 TGCCGATACGAACTCAATTCATTATTTCAGGATAATAAATG-AGAACCAAAGGAAATAGG 1424 Query 120 TTTTTTGGATGaaaaaaaaa-----aaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAAC 174 ||| | ||||||| |||| ||| || || |||||| ||||||| | |||| Sbjct 1423 GCTTTAGAATGAAAACAAAAAAGGCAATGATAGATTCCTTTTT--TTTTGAACACACAA- 1367 Query 175 AtttttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATTCAA 234 | |||||||||| |||| ||||||| || | ||||||||||||||||||| Sbjct 1366 -----TATTTTTACTTCCTTTTTTAGATTGAAATAATA---AAAAAATGATATGATTCAA 1315 Query 235 CCTCAAACCCATTT 248 |||||||| ||||| Sbjct 1314 CCTCAAACTCATTT 1301 >gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length=152218 Score = 219 bits (242), Expect = 7e-55 Identities = 202/255 (79%), Gaps = 18/255 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | || ||| ||||||||||||| |||||||||||||||||||| |||| |||| Sbjct 80294 AAATGGGTGGGGTACCAGAAAATATAGCAAGAAAGGCTATTTCAATAGCATCATCCAAAA 80235 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||||||||||| || || |||||||||| |||||| || Sbjct 80234 TGCCTATACGAACTCAATTCATTATTTCAGGGTAATAAATTAGAACCAAAGGAAAGAGGT 80175 Query 121 TTTTTGGATGaaaaaaaaaaaT-----TTCAGGTTTCTTTTTTGTTTTGAATAAACAACA 175 ||| |||||||| ||||||| | ||||| |||| ||||||| | | || Sbjct 80174 CTTTAAGATGAAAACAAAAAATGCAAATGTAGGTTCCTTT----TTTTGAACACAAAA-- 80121 Query 176 tttttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATTCAAC 235 | |||||||||| |||| | ||||| || | |||||||||||||||||||| Sbjct 80120 ----TATTTTTACTTCCATTTTTTGACTGAAAGAATA---AAAAAATGATATGATTCAAC 80068 Query 236 CTCAAACCCATTTGA 250 ||||||| ||||||| Sbjct 80067 CTCAAACTCATTTGA 80053 >gb|HQ179769.1| Limnanthes floccosa subsp. floccosa chloroplast sequence Length=152355 Score = 217 bits (240), Expect = 2e-54 Identities = 204/257 (79%), Gaps = 17/257 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||||| |||||||||||||||| |||||||||||||||||| || |||| Sbjct 80798 AAATGGGTGGAGTAGCCGAAAATATAGCCAGAAGGGCTATTTCAATAGCGGCGTCCAAAA 80739 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAA--CCAAAAGAAA-GA 117 |||||||| |||||||||||||||||| ||||||| |||||||| |||||||| | Sbjct 80738 TGCCTATAAAAACTCAATTCATTATTTCTGGATAGATATGTAGAATTAAAAAAGAAATTA 80679 Query 118 AGTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACA-- 175 ||| || |||| |||| | |||| ||||| ||| ||| | |||||| | Sbjct 80678 AGTATTGAGGAT--AAAACATTTCTTTCGGGTTTTTTTATTG------ACAAACAATATT 80627 Query 176 ----tttttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATT 231 ||||||||||| ||| | || ||||||| ||||||||||||||||||||||| Sbjct 80626 TTTCTTTTTTTTTTTTCTTTACATTGAAAATTGAAAGAACAGATAAAAAATGATATGATT 80567 Query 232 CAACCTCAAACCCATTT 248 |||||||| |||||||| Sbjct 80566 CAACCTCAGACCCATTT 80550 >gb|HQ179768.1| Limnanthes floccosa subsp. grandiflora chloroplast sequence Length=152352 Score = 217 bits (240), Expect = 2e-54 Identities = 204/257 (79%), Gaps = 17/257 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||||| |||||||||||||||| |||||||||||||||||| || |||| Sbjct 80797 AAATGGGTGGAGTAGCCGAAAATATAGCCAGAAGGGCTATTTCAATAGCGGCGTCCAAAA 80738 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAA--CCAAAAGAAA-GA 117 |||||||| |||||||||||||||||| ||||||| |||||||| |||||||| | Sbjct 80737 TGCCTATAAAAACTCAATTCATTATTTCTGGATAGATATGTAGAATTAAAAAAGAAATTA 80678 Query 118 AGTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACA-- 175 ||| || |||| |||| | |||| ||||| ||| ||| | |||||| | Sbjct 80677 AGTATTGAGGAT--AAAACATTTCTTTCGGGTTTTTTTATTG------ACAAACAATATT 80626 Query 176 ----tttttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATT 231 ||||||||||| ||| | || ||||||| ||||||||||||||||||||||| Sbjct 80625 TTTCTTTTTTTTTTTTCTTTACATTGAAAATTGAAAGAACAGATAAAAAATGATATGATT 80566 Query 232 CAACCTCAAACCCATTT 248 |||||||| |||||||| Sbjct 80565 CAACCTCAGACCCATTT 80549 >dbj|AB201293.1| Prunus apetala chloroplast rpl16 gene for ribosomal protein L16, partial cds, specimen_voucher:Cherry-Ohta 093 (TFA) Length=412 Score = 217 bits (240), Expect = 2e-54 Identities = 157/180 (87%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| Sbjct 237 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAGGGCAATTTCAATAGCGGCATCCAAAA 296 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||| |||| |||||| |||||||| |||| ||||| || Sbjct 297 TGCCTATACGAACTCAATTCATTCTTTCGGGATAGGGATGTAGAAACAAAGGAAAGGGGT 356 Query 121 TTTTTGGATG--aaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAttt 178 ||||| ||| ||||||||||||| |||| |||||||||||||| ||| || |||| Sbjct 357 CTTTTGTATGAAAAAAAAAAAAATTGCAGG----TTTTTTGTTTTGAAAAAATAATATTT 412 >gb|M80799.1|VIRCPRPL Vigna unguiculata chloroplast ribosomal protein (L16 and L14) genes, 3' and 5' end respectively Length=1268 Score = 217 bits (240), Expect = 2e-54 Identities = 202/255 (79%), Gaps = 16/255 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||| ||||||||||||| |||||||||||||||||||| |||| |||| Sbjct 908 AAATGGGTGGAGTACCAGAAAATATAGCAAGAAAGGCTATTTCAATAGCATCATCCAAAA 967 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||| ||||||||||||||||||||||||||||| || ||||||||| ||| | || Sbjct 968 TGCCGATACGAACTCAATTCATTATTTCAGGATAATAAAAGAGAACCAAAGAAAATAGGT 1027 Query 121 TTTTTGGATGaaaaaaaaa-----aaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACA 175 ||| | ||||||| |||| ||| ||||| |||||| ||||||| | | || Sbjct 1028 CTTTAGAATGAAAAGAAAAAAGGCAATAATAGGTTCCTTTTT--TTTTGAACACAAAA-- 1083 Query 176 tttttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATTCAAC 235 | |||||||||| |||| ||||||| || | |||||||||||||||||||| Sbjct 1084 ----TATTTTTACTTCCTTTTTTAGATTGAAATAATA---AAAAAATGATATGATTCAAC 1136 Query 236 CTCAAACCCATTTGA 250 ||||||| ||||||| Sbjct 1137 CTCAAACTCATTTGA 1151 >emb|CU633466.10| M.truncatula DNA sequence from clone MTH2-41H13 on chromosome 3, complete sequence Length=212063 Score = 215 bits (238), Expect = 8e-54 Identities = 202/251 (80%), Gaps = 11/251 (4%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | || || ||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 187952 AAATGGGAGGGGTCCCAGAAAATATAGCTAGAAAGGCTATTTCAATAGCGGCATCCAAAA 187893 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||| |||||| ||| || |||||| |||| | || Sbjct 187892 TGCCTATACGAACTCAATTCATTCTTTCAGAATAATCAT-TAGAAC-----GAAATAGGT 187839 Query 121 TTTTTGGATGaaaaaaa--aaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACA-ACAtt 177 ||| | |||||||||| |||| |||||||||||| |||| | |||| | | | Sbjct 187838 CTTTAGTATGAAAAAAATGGTAATTGTTGGTTTCTTTTTTTTTTTTTTTGAACACAGAAT 187779 Query 178 tttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATTCAACCT 237 ||||||||||||| ||||| | || ||| | ||| |||||||||||||||||||||| Sbjct 187778 ATTTTTTTTACTTCAACTTTTTGACTG-AAAGATAGA-AAAAAATGATATGATTCAACCT 187721 Query 238 CAAACCCATTT 248 |||||| |||| Sbjct 187720 CAAACCTATTT 187710 >gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete sequence Length=140624 Score = 215 bits (238), Expect = 8e-54 Identities = 202/251 (80%), Gaps = 11/251 (4%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | || || ||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 114442 AAATGGGAGGGGTCCCAGAAAATATAGCTAGAAAGGCTATTTCAATAGCGGCATCCAAAA 114501 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||| |||||| ||| || |||||| |||| | || Sbjct 114502 TGCCTATACGAACTCAATTCATTCTTTCAGAATAATCAT-TAGAAC-----GAAATAGGT 114555 Query 121 TTTTTGGATGaaaaaaa--aaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACA-ACAtt 177 ||| | |||||||||| |||| |||||||||||| |||| | |||| | | | Sbjct 114556 CTTTAGTATGAAAAAAATGGTAATTGTTGGTTTCTTTTTTTTTTTTTTTGAACACAGAAT 114615 Query 178 tttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATTCAACCT 237 ||||||||||||| ||||| | || ||| | ||| |||||||||||||||||||||| Sbjct 114616 ATTTTTTTTACTTCAACTTTTTGACTG-AAAGATAGA-AAAAAATGATATGATTCAACCT 114673 Query 238 CAAACCCATTT 248 |||||| |||| Sbjct 114674 CAAACCTATTT 114684 >gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete sequence Length=130054 Score = 215 bits (238), Expect = 8e-54 Identities = 202/251 (80%), Gaps = 11/251 (4%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | || || ||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 31061 AAATGGGAGGGGTCCCAGAAAATATAGCTAGAAAGGCTATTTCAATAGCGGCATCCAAAA 31002 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||| |||||| ||| || |||||| |||| | || Sbjct 31001 TGCCTATACGAACTCAATTCATTCTTTCAGAATAATCAT-TAGAAC-----GAAATAGGT 30948 Query 121 TTTTTGGATGaaaaaaa--aaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACA-ACAtt 177 ||| | |||||||||| |||| |||||||||||| |||| | |||| | | | Sbjct 30947 CTTTAGTATGAAAAAAATGGTAATTGTTGGTTTCTTTTTTTTTTTTTTTGAACACAGAAT 30888 Query 178 tttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATTCAACCT 237 ||||||||||||| ||||| | || ||| | ||| |||||||||||||||||||||| Sbjct 30887 ATTTTTTTTACTTCAACTTTTTGACTG-AAAGATAGA-AAAAAATGATATGATTCAACCT 30830 Query 238 CAAACCCATTT 248 |||||| |||| Sbjct 30829 CAAACCTATTT 30819 >dbj|AB201295.1| Prunus maximowiczii chloroplast rpl16 gene for ribosomal protein L16, partial cds, specimen_voucher:Cherry-Ohta 158 (TFA) Length=413 Score = 215 bits (238), Expect = 8e-54 Identities = 157/181 (87%), Gaps = 7/181 (4%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| Sbjct 237 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAGGGCAATTTCAATAGCGGCATCCAAAA 296 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||| |||| |||||| |||||||| |||| ||||| || Sbjct 297 TGCCTATACGAACTCAATTCATTCTTTCGGGATAGGGATGTAGAAACAAAGGAAAGGGGT 356 Query 121 TTTTTGGATG---aaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAtt 177 ||||| ||| ||||||||||||| |||| |||||||||||||| ||| || ||| Sbjct 357 CTTTTGTATGAAAAAAAAAAAAAATTGCAGG----TTTTTTGTTTTGAAAAAATAATATT 412 Query 178 t 178 | Sbjct 413 T 413 >dbj|AB201292.1| Prunus apetala chloroplast rpl16 gene for ribosomal protein L16, partial cds, specimen_voucher:Cherry-Ohta 164 (TFA) Length=413 Score = 215 bits (238), Expect = 8e-54 Identities = 157/181 (87%), Gaps = 7/181 (4%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| Sbjct 237 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAGGGCAATTTCAATAGCGGCATCCAAAA 296 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||| |||| |||||| |||||||| |||| ||||| || Sbjct 297 TGCCTATACGAACTCAATTCATTCTTTCGGGATAGGGATGTAGAAACAAAGGAAAGGGGT 356 Query 121 TTTTTGGATG---aaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAtt 177 ||||| ||| ||||||||||||| |||| |||||||||||||| ||| || ||| Sbjct 357 CTTTTGTATGAAAAAAAAAAAAAATTGCAGG----TTTTTTGTTTTGAAAAAATAATATT 412 Query 178 t 178 | Sbjct 413 T 413 >gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length=124033 Score = 215 bits (238), Expect = 8e-54 Identities = 202/251 (80%), Gaps = 11/251 (4%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | || || ||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 44454 AAATGGGAGGGGTCCCAGAAAATATAGCTAGAAAGGCTATTTCAATAGCGGCATCCAAAA 44513 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||| |||||| ||| || |||||| |||| | || Sbjct 44514 TGCCTATACGAACTCAATTCATTCTTTCAGAATAATCAT-TAGAAC-----GAAATAGGT 44567 Query 121 TTTTTGGATGaaaaaaa--aaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACA-ACAtt 177 ||| | |||||||||| |||| |||||||||||| |||| | |||| | | | Sbjct 44568 CTTTAGTATGAAAAAAATGGTAATTGTTGGTTTCTTTTTTTTTTTTTTTGAACACAGAAT 44627 Query 178 tttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATTCAACCT 237 ||||||||||||| ||||| | || ||| | ||| |||||||||||||||||||||| Sbjct 44628 ATTTTTTTTACTTCAACTTTTTGACTG-AAAGATAGA-AAAAAATGATATGATTCAACCT 44685 Query 238 CAAACCCATTT 248 |||||| |||| Sbjct 44686 CAAACCTATTT 44696 >dbj|AB201297.1| Prunus campanulata chloroplast rpl16 gene for ribosomal protein L16, partial cds, specimen_voucher:Cherry-Ohta 161 (TFA) Length=414 Score = 214 bits (236), Expect = 3e-53 Identities = 157/182 (86%), Gaps = 8/182 (4%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| Sbjct 237 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAGGGCAATTTCAATAGCGGCATCCAAAA 296 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||| |||| |||||| |||||||| |||| ||||| || Sbjct 297 TGCCTATACGAACTCAATTCATTCTTTCGGGATAGGGATGTAGAAACAAAGGAAAGGGGT 356 Query 121 TTTTTGGATG----aaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAt 176 ||||| ||| ||||||||||||| |||| |||||||||||||| ||| || || Sbjct 357 CTTTTGTATGAAAAAAAAAAAAAAATTGCAGG----TTTTTTGTTTTGAAAAAATAATAT 412 Query 177 tt 178 || Sbjct 413 TT 414 >gb|AC243153.1| Gossypium hirsutum clone MX100J07-jou, complete sequence Length=152015 Score = 212 bits (234), Expect = 1e-52 Identities = 194/235 (83%), Gaps = 14/235 (6%) Strand=Plus/Plus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 |||||||||||||||| |||||| |||| ||||||||||||||||||| | | ||||| Sbjct 109928 AAATGAGCGGAGTAGCTGAAAATGTAGCTAGAAAGGCTATTTCAATAGTGATGTAAAAAA 109987 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||| ||||||||||||||||||||||||| ||| |||||||||| ||| ||||| Sbjct 109988 TGCCTATAAAAACTCAATTCATTATTTCAGGATAGGAATATAGAACCAAAGGAAGGAAGT 110047 Query 121 TTT---TTGGATGaaaaaaaaaaaTT-TCAG-GTTTCTTTTTTGTTTTGAATAAACAACA 175 || |||| ||| ||||||| || | || |||||||||| || || | |||||| | Sbjct 110048 CTTGTCTTGG--GAATAAAAAAATTTGTGAGTTTTTCTTTTTTTTTCTG-ACAAACAATA 110104 Query 176 tttttttttttACTTCG-CCTT--TTGCATTGAAAAAACAGA--TAAAAAATGAT 225 ||| ||||||| ||||| ||| || ||||||||||| ||| ||||||||||| Sbjct 110105 TTTCTTTTTTT-CTTCGTTCTTTGTTACATTGAAAAAAGAGATTTAAAAAATGAT 110158 >gb|FJ695500.1| Jatropha curcas chloroplast, complete genome Length=163856 Score = 212 bits (234), Expect = 1e-52 Identities = 198/252 (79%), Gaps = 20/252 (8%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||||||||||||||||| ||||| ||||||||||| | |||||||||| Sbjct 88183 AAATGGGTGGAGTAGCAGAAAATATAGCGAGAAAATCTATTTCAATAACAGCATCAAAAA 88124 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||| ||||||||||| |||||||||| | | |||||||||| |||| | Sbjct 88123 TGCCTGTACGAACTCAACTCATTATTTCGG--------TATAGAACCAAAGGAAAAAGAC 88072 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAttttt 180 || ||||| |||||||| || ||||||||||||||||| |||||||| || | | Sbjct 88071 CTTGGGGATG--CCAAAAAAATCGCAAGTTTCTTTTTTGTTTTGGATAAACAAAATATCT 88014 Query 181 ttttttACTTCGCCTTTTGCATTGAAAAAACAGAT--AAAAAATGATATGATTCAACCTC 238 ||||| | |||||||| ||| ||||||| |||||| |||||||| ||| ||| Sbjct 88013 TTTTT--------CCTTTGCATTAAAATAACAGATAAAAAAAACGATATGATCCAATCTC 87962 Query 239 AAACCCATTTGA 250 |||||||||||| Sbjct 87961 AAACCCATTTGA 87950 >gb|BT051540.1| Medicago truncatula clone MTYF1_F2_F3_F41G-J-24 unknown mRNA Length=1007 Score = 212 bits (234), Expect = 1e-52 Identities = 202/251 (80%), Gaps = 12/251 (5%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | || || ||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 576 AAATGGGAGGGGTCCCAGAAAATATAGCTAGAAAGGCTATTTCAATAGCGGCATCCAAAA 517 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||||||| |||||| ||| || |||||| |||| | || Sbjct 516 TGCCTATACGAACTCAATTCATTCTTTCAGAATAATCAT-TAGAAC-----GAAATAGGT 463 Query 121 TTTTTGGATGaaaaaaa--aaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACA-ACAtt 177 ||| | |||||||||| |||| |||||||||||| |||| | |||| | | | Sbjct 462 CTTTAGTATGAAAAAAATGGTAATTGTTGGTTTCTTTTTT-TTTTTTTTGAACACAGAAT 404 Query 178 tttttttttACTTCGCCTTTTGCATTGAAAAAACAGATAAAAAATGATATGATTCAACCT 237 ||||||||||||| ||||| | || ||| | ||| |||||||||||||||||||||| Sbjct 403 ATTTTTTTTACTTCAACTTTTTGACTG-AAAGATAGA-AAAAAATGATATGATTCAACCT 346 Query 238 CAAACCCATTT 248 |||||| |||| Sbjct 345 CAAACCTATTT 335 >dbj|AP009368.1| Olimarabidopsis pumila chloroplast DNA, complete sequence Length=154737 Score = 212 bits (234), Expect = 1e-52 Identities = 203/257 (79%), Gaps = 20/257 (8%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | || ||| | ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 80957 AAATGGGTGGTGTACCTGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCAAAAA 80898 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAA---GAAAGA 117 |||||||| ||| |||||||| ||||| | |||| ||| ||||| |||| ||| | Sbjct 80897 TGCCTATAAAAACCCAATTCATAATTTCTGAATAGGAATATAGAATGAAAAAACTAAATA 80838 Query 118 AGTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAtt 177 | ||| | ||| ||||||| | |||| ||||||| ||||| | |||||| Sbjct 80837 ACATTT----AAGAATAAAAAAATTATCAGTTTTCTTT----TTTTG-ACAAACAA---- 80791 Query 178 tttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT----AAAAAATGATATGATTCA 233 | ||||||||||||| | |||||||| ||| || |||| |||||||||||||||||| Sbjct 80790 TATTTTTTTACTTCGTCCTTTGCATTAAAAGAAGAGATACAAAAAAAATGATATGATTCA 80731 Query 234 ACCTCAAACCCATTTGA 250 ||| |||||| |||||| Sbjct 80730 ACCACAAACCTATTTGA 80714 >gb|GU456628.1| Anthriscus cerefolium chloroplast, complete genome Length=154719 Score = 208 bits (230), Expect = 1e-51 Identities = 207/264 (78%), Gaps = 23/264 (9%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | |||||| |||||||||||||||||| ||| ||||||||||| | || |||| Sbjct 82026 AAATGGGTGGAGTAACAGAAAATATAGCCAGAAGGGCGATTTCAATAGCATCGTCCAAAA 81967 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 ||||||||||||||||||| |||||||| ||||| || |||| ||||||||| | || Sbjct 81966 TGCCTATACGAACTCAATTTATTATTTCGGGATAAAA----AGAATCAAAAGAAAAAGGT 81911 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTC--TTTTTTGTTTTGAATAAACAACAttt 178 || |||| ||||||||| ||||| | ||| || |||| | |||||| |||| Sbjct 81910 CTTGGGGAT-----AAAAAAATTACAGGTGCCGGTTTATTTCTTTGGACAAACAATATTT 81856 Query 179 -ttttttttACTTCGC-CT----TTTGCATTGAAAAAACAGAT------AAAAAATGATA 226 |||||||| |||| | || |||||||||||| || |||| ||||||||||| Sbjct 81855 CTTTTTTTTTCTTCACTCTTTGCTTTGCATTGAAAGAATAGATTAAAAAAAAAAATGATA 81796 Query 227 TGATTCAACCTCAAACCCATTTGA 250 |||||||||| || |||| ||||| Sbjct 81795 TGATTCAACCCCAGACCCTTTTGA 81772 >dbj|AP009374.1| Lepidium virginicum chloroplast DNA, complete sequence Length=154743 Score = 208 bits (230), Expect = 1e-51 Identities = 202/256 (79%), Gaps = 19/256 (7%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | || ||| | ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 81081 AAATGGGTGGTGTACCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCAAAAA 81022 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAA---GAAAGA 117 |||||||| ||| |||||||||||||| | |||| ||| ||||| |||| ||| | Sbjct 81021 TGCCTATAAAAACCCAATTCATTATTTCTGAATAGGAATATAGAATGAAAAAGCTAAATA 80962 Query 118 AGTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAtt 177 | ||| |||| ||||| | | || | ||||||| ||||| | |||||| Sbjct 80961 ACATTTAAGGAT----AAAAAGATTATCGGTTTTCTTT----TTTTG-ACAAACAA---- 80915 Query 178 tttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT---AAAAAATGATATGATTCAA 234 | ||||||||||||| | |||||||| ||| || |||| ||||||||||||||||||| Sbjct 80914 TATTTTTTTACTTCGTCCTTTGCATTAAAAGAAGAGATACAAAAAAATGATATGATTCAA 80855 Query 235 CCTCAAACCCATTTGA 250 || |||||| |||||| Sbjct 80854 CCACAAACCTATTTGA 80839 >emb|AJ400848.1| Spinacia oleracea complete chloroplast genome Length=150725 Score = 208 bits (230), Expect = 1e-51 Identities = 204/263 (78%), Gaps = 24/263 (9%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 |||| ||||||||||| |||||||||||| ||| |||| | ||||||||||||| |||| Sbjct 79831 AAATAAGCGGAGTAGCCGAAAATATAGCCCGAAGGGCTGTCGCAATAGCGGCATCGAAAA 79772 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||||||||||||||||||||||||||||| ||||| |||| ||| |||| | Sbjct 79771 TGCCTATACGAACTCAATTCATTATTTCAGGATAAGAATGTCGAACTAAAGGAAATGGAT 79712 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAttt-- 178 |||||||| ||||| |||| || ||| ||||| | |||||| |||| Sbjct 79711 CTTTTGGAT---AAAAACAAATAGAAG--------TTTTTTTTGGACAAACAATATTTCT 79663 Query 179 -----ttttttttACTTCGC-----CTTTTGCATTGAAAAAACAGATAAAAA-ATGATAT 227 ||||| | ||| || ||||||||||||| |||||||||||| | |||| Sbjct 79662 TTTTCTTTTTCATCCTTTGCATTTATTTTTGCATTGAAAGAACAGATAAAAACAAAATAT 79603 Query 228 GATTCAACCTCAAACCCATTTGA 250 |||||||||||| |||||||||| Sbjct 79602 GATTCAACCTCAGACCCATTTGA 79580 >dbj|AP009370.1| Barbarea verna chloroplast DNA, complete sequence Length=154532 Score = 206 bits (228), Expect = 4e-51 Identities = 201/258 (78%), Gaps = 22/258 (9%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 ||||| | || ||| | ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 80489 AAATGGGTGGTGTACCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCAAAAA 80430 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAA---GAAAGA 117 |||||||| ||| |||||||||||||| | |||| ||| ||||| |||| |||| | Sbjct 80429 TGCCTATAAAAACCCAATTCATTATTTCTGAATAGGAATATAGAATGAAAAAGCGAAATA 80370 Query 118 AGTTTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAtt 177 | ||| |||| ||||| | | |||| ||||||||||| | ||| || Sbjct 80369 ACATTTAAGGAT----AAAAAGATTATCAGTTTTCTTTTTTG------ACAAATAA---- 80324 Query 178 tttttttttACTTCGCCTTTTGCATTGAAAAAACAGAT-----AAAAAATGATATGATTC 232 | ||||||||||| | | |||||||| ||| || |||| ||||||||||||||||| Sbjct 80323 TATTTTTTTACTTAGTCCTTTGCATTAAAAGAAGAGATACAAAAAAAAATGATATGATTC 80264 Query 233 AACCTCAAACCCATTTGA 250 |||| |||||| |||||| Sbjct 80263 AACCACAAACCTATTTGA 80246 >gb|EF534108.1| Beta vulgaris chloroplast sequence Length=149696 Score = 205 bits (226), Expect = 1e-50 Identities = 202/263 (77%), Gaps = 25/263 (10%) Strand=Plus/Minus Query 1 AAATGAGCGGAGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCGGCATCAAAAA 60 |||| |||||||| || |||||||||||| ||| |||||| ||||||||||||| |||| Sbjct 80087 AAATAAGCGGAGTGGCCGAAAATATAGCCCGAAGGGCTATCGCAATAGCGGCATCGAAAA 80028 Query 61 TGCCTATACGAACTCAATTCATTATTTCAGGATAGAAATGTAGAACCAAAAGAAAGAAGT 120 |||||||| ||||||||||||||||||||||||| |||||||||| ||| |||| | Sbjct 80027 TGCCTATAAGAACTCAATTCATTATTTCAGGATAAGAATGTAGAACTAAAGGAAATGGAT 79968 Query 121 TTTTTGGATGaaaaaaaaaaaTTTCAGGTTTCTTTTTTGTTTTGAATAAACAACAttttt 180 |||||||| ||||| |||| || || ||||| | |||||| |||| | Sbjct 79967 CTTTTGGAT---AAAAACAAATGGAAG---------TTTTTTTGGACAAACAATATTTCT 79920 Query 181 ttttttACTTCGCC------------TTTTGCATTGAAAAAACAGATAAAAA-ATGATAT 227 |||| | ||| || || |||||||||| |||||||||||| | |||| Sbjct 79919 TTTTCTTTTTCACCCTTTGCATTTATTTGTGCATTGAAAGAACAGATAAAAACAAAATAT 79860 Query 228 GATTCAACCTCAAACCCATTTGA 250 |||||||||||| |||||||||| Sbjct 79859 GATTCAACCTCAGACCCATTTGA 79837 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: May 5, 2011 4:40 PM Number of letters in database: -603,512,907 Number of sequences in database: 1,559,823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Matrix: blastn matrix:2 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 1559823 Number of Hits to DB: 31150 Number of extensions: 12 Number of successful extensions: 12 Number of sequences better than 10: 11 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 11 Number of HSP's successfully gapped: 11 Length of query: 250 Length of database: 3691454385 Length adjustment: 31 Effective length of query: 219 Effective length of database: 3643099872 Effective search space: 797838871968 Effective search space used: 797838871968 A: 40 X1: 22 (20.1 bits) X2: 66 (59.5 bits) X3: 110 (99.2 bits) S1: 26 (24.7 bits) S2: 39 (36.5 bits)