Publications of bikou

2010

S. Amachi, K. Minami, I. Miyasaka and S. Fukunaga, Ability of anaerobic microorganisms to associate with iodine: 125I tracer experiments using laboratory strains and enriched microbial communities from subsurface formation water, Chemosphere 79, 349-354 (2010).

I. Sato, J. Yoshikawa, A. Furusawa, K. Chiku, S. Amachi and T. Fujii, Isolation and properties of malic enzyme and its gene in Rhodopseudomonas palustris No. 7, Biosci. Biotechnol. Biochem. 74, 75-81 (2010).

2008

W. Suda, M. Oto, S. Amachi, H. Shinoyama and M. Shishido, A direct method to isolate DNA from phyllosphere microbial communities without disrupting leaf tissues, Microb. Environ., 23, 248-252 (2008).

J. Yoshikawa, S. Amachi, H. Shinoyama and T. Fujii, Production of fructooligosaccharides by crude enzyme preparations of beta-fructofuranosidase from Aureobasidium pullulans, Biotechnol. Lett., 30, 535-539 (2008).

K. Chiku, J. Uzawa, H. Seki, S. Amachi, T. Fujii and H. Shinoyama, Characterization of a novel polyphenol-specific oligoxyloside transfer reaction by a family 11 xylanase from Bacillus sp. KT12, Biosci. Biotechnol. Biochem., 72, 2285-2293 (2008).

2007

S. Amachi, K. Kimura, Y. Muramatsu, H. Shinoyama and T. Fujii, Hydrogen peroxide-dependent uptake of iodine by a marine Flavobacteriaceae bacterium strain C-21, Appl. Environ. Microbiol., 73, 7536-7541 (2007).

S. Amachi, N. Kawaguchi, Y. Muramatsu, S. Tsuchiya, Y. Watanabe, H. Shinoyama and T. Fujii, Dissimilatory iodate reduction by marine Pseudomonas sp. strain SCT, Appl. Environ. Microbiol., 73, 5725-5730 (2007).

J. Yoshikawa, S. Amachi, H. Shinoyama and T. Fujii, Purification and some properties of beta-fructofuranosidase I formed by Aureobasidium pullulans DSM2404, J. Biosci. Bioeng., 103, 491-493 (2007).

H. Homma, H. Shinoyama, Y. Nobuta, Y. Terashima, S. Amachi and T. Fujii, Lignin-degrading activity of edible mushroom Strobilurus ohshimae that forms fruiting bodies on buried sugi (Cryptomeria japonica) twigs, J. Wood Sci., 53, 80-84 (2007).

2006

J. Yoshikawa, S. Amachi, H. Shinoyama and T. Fujii, Multiple beta-fructofuranosidases by Aureobasidium pullulans DSM2404 and their roles in fructooligosaccharide production, FEMS Microbiol. Lett., 265, 159-163 (2006).

T. Ban-nai, Y. Muramatsu and S. Amachi, Rate of iodine volatilization and accumulation by filamentous fungi through laboratory cultures, Chemosphere, 65, 2216-2222 (2006).

H. Homma, H. Shinoyama, M. Tanibe, S. Amachi, T. Fukiharu and T. Fujii, Fruiting-body formation, cultivation properties, and host specificity of a fungicolous fungus, Asterophora lycoperdoides, Mycoscience, 47, 269-276 (2006).

2005

S. Amachi, Y. Mishima, H. Shinoyama, Y. Muramatsu and T. Fujii, Active transport and accumulation of iodide by newly isolated marine bacteria, Appl. Environ. Microbiol. 71, 741-745 (2005).

S. Amachi, Y. Muramatsu, Y. Akiyama, K. Miyazaki, S. Yoshiki, S. Hanada, Y. Kamagata, T. Ban-nai, H. Shinoyama and T. Fujii, Isolation of iodide-oxidizing bacteria from iodide-rich natural gas brines and seawaters, Microbial Ecol. 49, 547-557 (2005).

S. Amachi, Y. Muramatsu, H. Shinoyama and T. Fujii, Application of autoradiography and a radiotracer method for the isolation of iodine-accumulating bacteria, J. Radioanal. Nucl. Chem., 266, 229-234 (2005).

H. –S. Ko, H. Fujiwara, Y. Yokoyama, N. Ohno, S. Amachi, H. Shinoyama and T. Fujii, Inducible production of alcohol oxidase and catalase in a pectin medium by Thermoascus aurantiacus IFO 31693, J. Biosci. Bioeng. 99, 290-292 (2005).

H. –S. Ko, Y. Yokoyama, N. Ohno, M. Okadome, S. Amachi, H. Shinoyama and T. Fujii, Purification and characterization of intracellular and extracellular, thermostable and alkaline-tolerant alcohol oxidases produced by a thermophilic fungus, Thermoascus aurantiacus NBRC 31693, J. Biosci. Bioeng. 99, 348-353 (2005).

2004

S. Amachi, M. Kasahara, T. Fujii, H. Shinoyama, S. Hanada, Y. Kamagata, T. Ban-nai and Y. Muramatsu, Radiotracer experiments on biological volatilization of organic iodine from coastal seawaters, Geomicrobiol. J., 21, 481-488 (2004).

Y. Muramatsu, S. Yoshida, U. Fehn, S. Amachi and Y. Ohmomo, Studies with natural and anthropogenic iodine isotopes: iodine distribution and cycling in the global environment, J. Environ. Radioactivity, 74, 221-232 (2004).

S. Horikiri, Y. Aizawa, T. Kai, S. Amachi, H. Shinoyama and T. Fujii, Electron acquisition system constructed from an NAD-independent D-lactate dehydrogenase and cytochrome c2 in Rhodopseudomonas palustris No. 7, Biosci. Biotechnol. Biochem., 68, 516-522 (2004).

2008

S. Amachi, Microbial contribution to global iodine cycling: volatilization, accumulation, reduction, oxidation, and sorption of iodine, Microb. Environ., 23, 269-276 (2008).

2009

荒尾知人、加藤英孝、牧野知之、赤羽幾子、鈴木克拓、天知誠吾、山口紀子、高橋嘉夫、石川覚、川崎晃、松本真悟、前島勇治、村上政治、門倉雅史、堀田博、水田土壌及び水稲における化学形態別ヒ素の動態に関する最近の研究動向、農業環境技術研究所報告, 26, 91-103 (2009).

2008

天知誠吾、ヨウ素と微生物の相互作用　–ヨウ素の揮発、濃縮、還元、酸化、吸着-、食と緑の科学, Vol. 62, pp. 9-19 (2008).

2007

天知誠吾、藤井貴明、海洋のヨウ素循環と微生物の役割、化学と生物, Vol. 45, No. 7, pp. 453-455 (2007).

2006

天知誠吾、村松康行、ヨウ素から見えてくる地球・環境・生物、化学経済, Vol. 53, No. 3, pp. 43-48, 化学工業日報社 (2006).

2005

天知誠吾、ヨウ素サイクルとバクテリア、ヨウ素化合物の機能と応用, 横山正孝　編, pp 249-259, シーエムシー出版 (2005).

2004

天知誠吾、鎌形洋一、ヨウ素と微生物の知られざる関わり、バイオサイエンスとインダストリー, vol. 62, No. 3, pp. 17-22 (2004).

2011

Yuki Kobayashi, Sousuke Imamura, Mitsumasa Hanaoka and Kan Tanaka (2011) A tetrapyrrole-regulated ubiquitin ligase controls algal nuclear DNA replication. Nature Cell Biol. 13, 483-487.

2010

Mitsumasa Hanaoka, Takayuki Kawakami and Kan Tanaka (2010) Chloroplast isolation and run-on transcription assay in Cyanidioschyzon merolae. Endocytobiosis Cell Res. 42-52.

Yuki Kobayashi, Mio Ohnuma, Tsuneyoshi Kuroiwa, Kan Tanaka and Mitsumasa Hanaoka (2010) The basics of cultivation and molecular genetic analysis of the unicellular red algaCyanidioschyzon merolae. Endocytobiosis Cell Res. 53-61.

2009

Yu Kanesaki, Yuki Kobayashi, Mitsumasa Hanaoka and Kan Tanaka (2009) Mg-Protoporphyrin IX signaling in Cyanidioschyzon meroale: Multiple pathways may involve the retrograde signaling in plant cells. Plant Signal. Behav. 4, 85-88.[PubMed]

2008

Sousuke Imamura, Mitsumasa Hanaoka and Kan Tanaka (2008) The plant-specific TFIIB-related protein, pBrp, is a general transcription factor for RNA polymerase I. EMBO J. 27, 2317-2327. [PubMed]

Mitsumasa Hanaoka and Kan Tanaka (2008) Dynamics of RpaB-promoter interaction during high light stress, revealed by chromatin immunoprecipitation (ChIP) analysis in Synechococcus elongatus PCC 7942.Plant J. 56, 327-335.

2007

Asako Seki, Mitsumasa Hanaoka, Yuki Akimoto, Susumu Masuda, Hideo Iwasaki and Kan Tanaka (2007) Induction of a group 2 sigma factor, RpoD3, by high light and the underlying mechanism in Synechococcus elongatus PCC 7942. J. Biol. Chem. 282(51), 36887-36894.

2006

Masahiko Imashimizu, Mitsumasa Hanaoka, Asako Seki, Katsuhiko Murakami and Kan Tanaka (2006) The cyanobacterial principal s factor region 1.1 is involved in DNA binding in the free form and in transcription activity as holoenzyme. FEBS Lett. 580 (14), 3439-3444.

2005

Ayumi Minoda, Mitsumasa Hanaoka, Kirina Nagasawa, Makoto Horiuchi, Hideo Takahashi and Kan Tanaka (2005) Microarray profiling of plastid gene expression in a unicellular red alga, Cyanidioschyzon merolae. Plant Mol. Biol. 59, 375-385.

Mitsumasa Hanaoka, Kengo Kanamaru, Makoto Fujiwara, Hideo Takahashi and Kan Tanaka (2005) A Switch in RNA Polymerase Usage Mediated by tRNAGlu During Chloroplast Development. EMBO Rep. 6 (6), 545-550.

2004

Akitomo Nagashima, Mitsumasa Hanaoka, Toshiharu Shikanai, Makoto Fujiwara, Kengo Kanamaru, Hideo Takahashi and Kan Tanaka (2004) The multiple-stress responsive plastid sigma factor, SIG5, directs activation of the psbD light responsive promoter (LRP) in Arabidopsis thaliana. Plant Cell Physiol. 45, 357-368.

Akitomo Nagashima, Mitsumasa Hanaoka, Reiko Motohashi, Motoaki Seki, Kazuo Shinozaki, Kengo Kanamaru, Hideo Takahashi and Kan Tanaka (2004) DNA Microarray analysis of Plastid Gene Expression in an Arabidopsis Mutant Deficient in a Plastid Transcription Factor Sigma, SIG2. Biosci. Biotechnol. Biochem. 68 (3) 694-704.

2003

Mitsumasa Hanaoka, Kengo Kanamaru, Hideo Takahashi and Kan Tanaka (2003) Molecular genetic analysis of chloroplast gene promoters dependent on SIG2, a nucleus-encoded sigma factor for the plastid-encoded RNA polymerase, in Arabidopsis thaliana. Nucleic Acids Res. 31, 7090-7098.

2010

Mitsumasa Hanaoka and Kan Tanaka (2010) Coordination of nuclear and plastid gene expression in red and green plants. In Red Algae in Genomic Age, Cellular Origin, Life in Extreme Habitats and Astrobiology 13, 171-190. Joseph Sechbach, David J. Chapman and Andreas Weber (eds.), Springer Science.

2009

今村壮輔、華岡光正、田中　寛、植物で明らかにされたリボゾームRNA合成酵素の進化の道筋ー植物特異的な TFIIB 型基本転写因子 pBrp の機能解析ー、化学と生物、47, 740-742 (2009).